]> Creatis software - clitk.git/log
clitk.git
13 years agoBug clitkAffineTransform make rotate/translate options usable separately
Vivien Delmon [Thu, 19 Apr 2012 14:30:31 +0000 (16:30 +0200)]
Bug clitkAffineTransform make rotate/translate options usable separately

- Allow the use of rotate and translate alone by setting missing
  parameters to 0.

13 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 18 Apr 2012 16:08:33 +0000 (18:08 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

13 years agoAdd rotate and translate option to clitkAffineTransform
Vivien Delmon [Wed, 18 Apr 2012 16:07:55 +0000 (18:07 +0200)]
Add rotate and translate option to clitkAffineTransform

13 years ago Add GetForwardAffineMatrix wrapper
Vivien Delmon [Wed, 18 Apr 2012 14:26:40 +0000 (16:26 +0200)]
 Add GetForwardAffineMatrix wrapper

13 years agoimage fusion now display colour legend too
Romulo Pinho [Wed, 18 Apr 2012 14:11:27 +0000 (16:11 +0200)]
image fusion now display colour legend too

- even the alpha threshold

13 years agoAdd GetRotationMatrix2D and GetRotationMatrix wrapper
Vivien Delmon [Wed, 18 Apr 2012 12:29:51 +0000 (14:29 +0200)]
Add GetRotationMatrix2D and GetRotationMatrix wrapper

13 years agoupgrade in contour stats script
Romulo Pinho [Tue, 17 Apr 2012 09:02:59 +0000 (11:02 +0200)]
upgrade in contour stats script

13 years agoadded new script to install
Romulo Pinho [Tue, 17 Apr 2012 08:19:16 +0000 (10:19 +0200)]
added new script to install

13 years agonew script to get contour statistics
Romulo Pinho [Tue, 17 Apr 2012 08:05:08 +0000 (10:05 +0200)]
new script to get contour statistics

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Fri, 13 Apr 2012 08:16:59 +0000 (10:16 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agoFixed bug with extension detection in snapshots
Simon Rit [Fri, 13 Apr 2012 08:16:37 +0000 (10:16 +0200)]
Fixed bug with extension detection in snapshots

13 years agoFixed uint portability issue
Simon Rit [Fri, 13 Apr 2012 08:16:00 +0000 (10:16 +0200)]
Fixed uint portability issue

13 years agoCrash with rigid transformation
Romulo Pinho [Thu, 12 Apr 2012 13:14:07 +0000 (15:14 +0200)]
Crash with rigid transformation

- when current slice was outside the image extent after the transformation

13 years agoAdd vtkQVTK to VTK_LIBRARIES for old VTK
Romulo Pinho [Thu, 12 Apr 2012 13:13:25 +0000 (15:13 +0200)]
Add vtkQVTK to VTK_LIBRARIES for old VTK

- fine tuning what to add when...

13 years agoAdd missing this->
Vivien Delmon [Wed, 11 Apr 2012 15:51:03 +0000 (17:51 +0200)]
Add missing this->

- gcc 4.7 issue.

13 years agoAdd missing include of unistd.h
Vivien Delmon [Wed, 11 Apr 2012 15:47:22 +0000 (17:47 +0200)]
Add missing include of unistd.h

- gcc 4.7 standard library does not include unistd.h anymore.

13 years agoAdd vtkQVTK to VTK_LIBRARIES for old VTK
Romulo Pinho [Wed, 4 Apr 2012 11:01:24 +0000 (13:01 +0200)]
Add vtkQVTK to VTK_LIBRARIES for old VTK

- linked to commit 34835ff9cb225bfa8b317683fb2b27b4f6424dc2
- updated the lowest version

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 4 Apr 2012 08:10:00 +0000 (10:10 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agoremoved --roi from VV's cmd line options
Romulo Pinho [Wed, 4 Apr 2012 08:08:49 +0000 (10:08 +0200)]
removed --roi from VV's cmd line options

- respective code is still commented, though

13 years agoMake new ROI Tool not experimental
David Sarrut [Fri, 30 Mar 2012 13:51:13 +0000 (15:51 +0200)]
Make new ROI Tool not experimental

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 30 Mar 2012 13:19:25 +0000 (15:19 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agoRemove std::cout
David Sarrut [Fri, 30 Mar 2012 13:19:01 +0000 (15:19 +0200)]
Remove std::cout

13 years agoManage Save/Read state
David Sarrut [Fri, 30 Mar 2012 13:18:34 +0000 (15:18 +0200)]
Manage Save/Read state

13 years agoAdd GetToolCreatorFromName
David Sarrut [Fri, 30 Mar 2012 13:18:14 +0000 (15:18 +0200)]
Add GetToolCreatorFromName

13 years agoRemove debug
David Sarrut [Fri, 30 Mar 2012 13:17:58 +0000 (15:17 +0200)]
Remove debug

13 years agoAdd ReadTools and WriteTools
David Sarrut [Fri, 30 Mar 2012 13:17:48 +0000 (15:17 +0200)]
Add ReadTools and WriteTools

13 years agoAdd RemoveActors and CopyParameters
David Sarrut [Fri, 30 Mar 2012 13:17:29 +0000 (15:17 +0200)]
Add RemoveActors and CopyParameters

13 years agoAdd accessors for colors
David Sarrut [Fri, 30 Mar 2012 13:17:18 +0000 (15:17 +0200)]
Add accessors for colors

13 years agoAdd RemoveActors
David Sarrut [Fri, 30 Mar 2012 13:16:57 +0000 (15:16 +0200)]
Add RemoveActors

13 years agoAdd RemoveActors
David Sarrut [Fri, 30 Mar 2012 13:16:41 +0000 (15:16 +0200)]
Add RemoveActors

13 years agoReplace * by Pointer
David Sarrut [Fri, 30 Mar 2012 13:15:50 +0000 (15:15 +0200)]
Replace * by Pointer

13 years agocorrected #ifdef for AnimatedGIF screenshots
Romulo Pinho [Fri, 30 Mar 2012 12:18:28 +0000 (14:18 +0200)]
corrected #ifdef for AnimatedGIF screenshots

13 years agoAdd RemoveActors and modify SetDepth
David Sarrut [Fri, 30 Mar 2012 11:45:08 +0000 (13:45 +0200)]
Add RemoveActors and modify SetDepth

13 years agoAdd RemoveActors
David Sarrut [Fri, 30 Mar 2012 11:44:33 +0000 (13:44 +0200)]
Add RemoveActors

13 years agoCall InitializeNewTool after tool constructor to allow reading in state file
David Sarrut [Fri, 30 Mar 2012 11:43:20 +0000 (13:43 +0200)]
Call InitializeNewTool after tool constructor to allow reading in state file

13 years agoAdd mReadStateFlag mImageIndex m_XmlReader GetListOfTool
David Sarrut [Fri, 30 Mar 2012 11:42:22 +0000 (13:42 +0200)]
Add mReadStateFlag mImageIndex m_XmlReader GetListOfTool

13 years agoAdd mReadStateFlag and mImageIndex
David Sarrut [Fri, 30 Mar 2012 11:41:36 +0000 (13:41 +0200)]
Add mReadStateFlag and mImageIndex

13 years agoCosmetic
David Sarrut [Fri, 30 Mar 2012 11:41:19 +0000 (13:41 +0200)]
Cosmetic

13 years agobug in Z origin in clitkDicom2Image
Romulo Pinho [Fri, 30 Mar 2012 11:26:27 +0000 (13:26 +0200)]
bug in Z origin in clitkDicom2Image

- bug happened when using --std_input

13 years agoAdd SaveState and XmlReader capabilities
David Sarrut [Fri, 30 Mar 2012 09:52:01 +0000 (11:52 +0200)]
Add SaveState and XmlReader capabilities

13 years agoCosmetic
David Sarrut [Fri, 30 Mar 2012 09:24:30 +0000 (11:24 +0200)]
Cosmetic

13 years agoAdd "-h" in addition to "--help"
David Sarrut [Fri, 30 Mar 2012 09:06:53 +0000 (11:06 +0200)]
Add "-h" in addition to "--help"

13 years agoAdd vvToolBaseBase.cc
David Sarrut [Fri, 30 Mar 2012 09:06:34 +0000 (11:06 +0200)]
Add vvToolBaseBase.cc

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 30 Mar 2012 06:14:36 +0000 (08:14 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agosmall bug with landmark indices after deletion
Romulo Pinho [Wed, 28 Mar 2012 12:48:34 +0000 (14:48 +0200)]
small bug with landmark indices after deletion

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 28 Mar 2012 08:15:23 +0000 (10:15 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agopossibility to delete selected landmarks in VV
Romulo Pinho [Wed, 28 Mar 2012 08:13:57 +0000 (10:13 +0200)]
possibility to delete selected landmarks in VV

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 28 Mar 2012 06:26:11 +0000 (08:26 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agocmake libstatgrab issue back to normal
Gauthier Bouilhol [Tue, 27 Mar 2012 15:42:57 +0000 (17:42 +0200)]
cmake libstatgrab issue back to normal

13 years agoremove mCurrentSlicerManager
David Sarrut [Tue, 27 Mar 2012 11:06:08 +0000 (13:06 +0200)]
remove mCurrentSlicerManager

13 years agoRename as old roi_manager
David Sarrut [Tue, 27 Mar 2012 11:05:41 +0000 (13:05 +0200)]
Rename as old roi_manager

13 years agoAdd savestate and initializetool default implementation
David Sarrut [Tue, 27 Mar 2012 10:16:23 +0000 (12:16 +0200)]
Add savestate and initializetool default implementation

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 26 Mar 2012 08:11:53 +0000 (10:11 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agocompatibility with old Qt
Joël Schaerer [Fri, 23 Mar 2012 11:40:48 +0000 (12:40 +0100)]
compatibility with old Qt

13 years agoPrompt transform backup when saving image in vv.
Simon Rit [Fri, 23 Mar 2012 09:33:03 +0000 (10:33 +0100)]
Prompt transform backup when saving image in vv.

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 23 Mar 2012 06:42:40 +0000 (07:42 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agoAdded animated GIF video snapshot (CLITK_EXPERIMENTAL yet)
Simon Rit [Thu, 22 Mar 2012 17:56:50 +0000 (18:56 +0100)]
Added animated GIF video snapshot (CLITK_EXPERIMENTAL yet)

13 years agoAdded Windows avi possibility
Simon Rit [Thu, 22 Mar 2012 16:52:07 +0000 (17:52 +0100)]
Added Windows avi possibility

13 years agoSimplified video capture code
Simon Rit [Thu, 22 Mar 2012 16:50:10 +0000 (17:50 +0100)]
Simplified video capture code

13 years agoSimplified image snapshot code
Simon Rit [Thu, 22 Mar 2012 16:06:02 +0000 (17:06 +0100)]
Simplified image snapshot code

13 years agoAdded CMakeFile with minimum set of cpp files for creating animated gifs
Simon Rit [Thu, 22 Mar 2012 15:52:18 +0000 (16:52 +0100)]
Added CMakeFile with minimum set of cpp files for creating animated gifs

13 years agoDisable ROI gui if no roi are selected.
David Sarrut [Thu, 22 Mar 2012 14:45:29 +0000 (15:45 +0100)]
Disable ROI gui if no roi are selected.

13 years agoRemove debug
David Sarrut [Thu, 22 Mar 2012 14:42:06 +0000 (15:42 +0100)]
Remove debug

13 years agoChange configuration for portability issues and only activate gif format
Simon Rit [Wed, 21 Mar 2012 17:38:29 +0000 (18:38 +0100)]
Change configuration for portability issues and only activate gif format

13 years agoCxImage sources taken from
Simon Rit [Wed, 21 Mar 2012 17:35:40 +0000 (18:35 +0100)]
CxImage sources taken from
http://www.codeproject.com/KB/graphics/cximage/cximage600_full.zip

13 years agoAdd comments on the extrusion filter (Scaling not set)
David Sarrut [Wed, 21 Mar 2012 08:32:57 +0000 (09:32 +0100)]
Add comments on the extrusion filter (Scaling not set)

13 years agoAdd boolean macro for Extrude flag
David Sarrut [Wed, 21 Mar 2012 08:03:55 +0000 (09:03 +0100)]
Add boolean macro for Extrude flag

13 years agoRemove debug message
David Sarrut [Wed, 21 Mar 2012 07:59:57 +0000 (08:59 +0100)]
Remove debug message

13 years agoRemove gtest reference
Simon Rit [Tue, 20 Mar 2012 15:50:28 +0000 (16:50 +0100)]
Remove gtest reference

13 years agoPrevent segfault on close ; remove actors when close
David Sarrut [Tue, 20 Mar 2012 13:39:53 +0000 (14:39 +0100)]
Prevent segfault on close ; remove actors when close

13 years agoSlitghly more compact design
David Sarrut [Tue, 20 Mar 2012 13:24:05 +0000 (14:24 +0100)]
Slitghly more compact design

13 years agoAdd dice with reference image
David Sarrut [Tue, 20 Mar 2012 13:23:24 +0000 (14:23 +0100)]
Add dice with reference image

13 years agoAdd dice with ref measure
David Sarrut [Tue, 20 Mar 2012 13:21:49 +0000 (14:21 +0100)]
Add dice with ref measure

13 years agoAdd FastFlag and radius option
David Sarrut [Tue, 20 Mar 2012 13:18:22 +0000 (14:18 +0100)]
Add FastFlag and radius option

13 years agoCompute dice and not another overlap measure (2*i/add)
David Sarrut [Tue, 20 Mar 2012 13:11:06 +0000 (14:11 +0100)]
Compute dice and not another overlap measure (2*i/add)

13 years agoResize fuzzymap is spacing enabled
David Sarrut [Tue, 20 Mar 2012 13:07:37 +0000 (14:07 +0100)]
Resize fuzzymap is spacing enabled

13 years agoadd support for Nifti and Nrrd
Joël Schaerer [Mon, 19 Mar 2012 14:59:26 +0000 (15:59 +0100)]
add support for Nifti and Nrrd

Signed-off-by: Romulo Pinho <romulo.pinho@lyon.unicancer.fr>
13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 19 Mar 2012 14:54:12 +0000 (15:54 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agoAdd FastFlag and Radius options (from initial RP)
David Sarrut [Fri, 16 Mar 2012 08:31:11 +0000 (09:31 +0100)]
Add FastFlag and Radius options (from initial RP)

13 years agoAdd verbose for Fast and Radius options
David Sarrut [Fri, 16 Mar 2012 08:30:56 +0000 (09:30 +0100)]
Add verbose for Fast and Radius options

13 years agoSmall debug for args_info stuff
David Sarrut [Fri, 16 Mar 2012 08:30:40 +0000 (09:30 +0100)]
Small debug for args_info stuff

13 years agoRemove comments
David Sarrut [Fri, 16 Mar 2012 08:30:04 +0000 (09:30 +0100)]
Remove comments

13 years agoSet tab "image" open (instead of ROI)
David Sarrut [Fri, 16 Mar 2012 08:29:47 +0000 (09:29 +0100)]
Set tab "image" open (instead of ROI)

13 years agoTemporary hide "open dicom" button
David Sarrut [Fri, 16 Mar 2012 08:29:27 +0000 (09:29 +0100)]
Temporary hide "open dicom" button

13 years agooption to output the distance map in motion mask
Romulo Pinho [Thu, 8 Mar 2012 10:41:30 +0000 (11:41 +0100)]
option to output the distance map in motion mask

13 years agomidp scripts with mask_type option
Romulo Pinho [Thu, 8 Mar 2012 10:38:54 +0000 (11:38 +0100)]
midp scripts with mask_type option

- either mm, lungs, or patient for the moment

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Thu, 1 Mar 2012 09:47:59 +0000 (10:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agosmall correction for BitRateTolerance
Gauthier Bouilhol [Wed, 29 Feb 2012 17:52:09 +0000 (18:52 +0100)]
small correction for BitRateTolerance

13 years agoFrame rate selection window added for ffmpeg and BitRateTolerance
Gauthier Bouilhol [Wed, 29 Feb 2012 17:00:49 +0000 (18:00 +0100)]
Frame rate selection window added for ffmpeg and BitRateTolerance
forced to a non-zero value

13 years agoLINK_DIRECTORIES(${LIBSTATGRAB}/../lib) and
Gauthier Bouilhol [Wed, 29 Feb 2012 16:25:39 +0000 (17:25 +0100)]
LINK_DIRECTORIES(${LIBSTATGRAB}/../lib) and
LINK_DIRECTORIES(${LIBSTATGRAB}/../lib64) added

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Gauthier Bouilhol [Wed, 29 Feb 2012 13:39:34 +0000 (14:39 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agoINCLUDE_DIRECTORIES(${LIBSTATGRAB}/../include) added to find statgrab.h
Gauthier Bouilhol [Wed, 29 Feb 2012 13:38:23 +0000 (14:38 +0100)]
INCLUDE_DIRECTORIES(${LIBSTATGRAB}/../include) added to find statgrab.h
after make install of libstatgrab

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 29 Feb 2012 13:10:22 +0000 (14:10 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

13 years agocorrected make install issue for Mac
Romulo Pinho [Wed, 29 Feb 2012 13:09:44 +0000 (14:09 +0100)]
corrected make install issue for Mac

13 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 29 Feb 2012 12:14:56 +0000 (13:14 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

13 years agoReplace tabulations with space in pts_to_landmarks script
Vivien Delmon [Wed, 29 Feb 2012 12:13:01 +0000 (13:13 +0100)]
Replace tabulations with space in pts_to_landmarks script

13 years ago--centre added to BLUTDIR call in midP
Romulo Pinho [Tue, 28 Feb 2012 12:25:47 +0000 (13:25 +0100)]
--centre added to BLUTDIR call in midP

13 years agoinitial image centralization (BLUT) is optional
Romulo Pinho [Tue, 28 Feb 2012 12:25:33 +0000 (13:25 +0100)]
initial image centralization (BLUT) is optional

- with --centre flag

13 years agoadded initial image centralization to BLUTDIR
Romulo Pinho [Tue, 28 Feb 2012 09:47:09 +0000 (10:47 +0100)]
added initial image centralization to BLUTDIR

13 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 27 Feb 2012 10:55:41 +0000 (11:55 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk