]> Creatis software - clitk.git/log
clitk.git
13 years agocreate_sequence.sh and dcm_sort_by_field.sh removed
Gauthier Bouilhol [Wed, 12 Oct 2011 11:21:27 +0000 (13:21 +0200)]
create_sequence.sh and dcm_sort_by_field.sh removed

13 years agoclitk header added
Gauthier Bouilhol [Tue, 11 Oct 2011 14:49:31 +0000 (16:49 +0200)]
clitk header added

13 years agocorrection in motion mask script
dbcache [Tue, 11 Oct 2011 14:38:04 +0000 (16:38 +0200)]
correction in motion mask script

13 years agonow compatible with GDCM 1.x and GDCM 2.x
Gauthier Bouilhol [Tue, 11 Oct 2011 14:30:15 +0000 (16:30 +0200)]
now compatible with GDCM 1.x and GDCM 2.x

13 years agocorrection in motion mask script
dbcache [Tue, 11 Oct 2011 12:18:12 +0000 (14:18 +0200)]
correction in motion mask script

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Tue, 11 Oct 2011 10:05:29 +0000 (12:05 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMake clitkDicomWave2Text compile with itk4
Vivien Delmon [Tue, 11 Oct 2011 09:44:37 +0000 (11:44 +0200)]
Make clitkDicomWave2Text compile with itk4

- Protect the code with GDCM_MAJOR_VERSION < 2 and print an error
  message when compiled with 2.x GDCM version.

13 years agoremoving stray characters from beginning of files
Romulo Pinho [Tue, 11 Oct 2011 09:35:42 +0000 (11:35 +0200)]
removing stray characters from beginning of files

- patch sent by Joël Schaerer

13 years agoCompilation error related to GDCM-2
Romulo Pinho [Tue, 11 Oct 2011 08:09:44 +0000 (10:09 +0200)]
Compilation error related to GDCM-2

13 years agoRemove debug and correct slice position for CaudlaMarginOf BV
David Sarrut [Mon, 10 Oct 2011 12:16:20 +0000 (14:16 +0200)]
Remove debug and correct slice position for CaudlaMarginOf BV

13 years agoAdd comment (future changes todo)
David Sarrut [Mon, 10 Oct 2011 12:15:44 +0000 (14:15 +0200)]
Add comment (future changes todo)

13 years agoChange comments
David Sarrut [Mon, 10 Oct 2011 12:15:31 +0000 (14:15 +0200)]
Change comments

13 years agoSaveScreenshotAllSlices : filenames correction and correct update to force the displa...
David Sarrut [Mon, 10 Oct 2011 07:55:57 +0000 (09:55 +0200)]
SaveScreenshotAllSlices : filenames correction and correct update to force the display of ROI.

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Mon, 10 Oct 2011 07:04:51 +0000 (09:04 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoclitkDicomWave2Text tool added
Gauthier Bouilhol [Fri, 7 Oct 2011 12:26:33 +0000 (14:26 +0200)]
clitkDicomWave2Text tool added

13 years agoinstall of motion_amplitude script
Romulo Pinho [Fri, 7 Oct 2011 09:45:52 +0000 (11:45 +0200)]
install of motion_amplitude script

13 years agocalculation of an RTstruct's motion amplitude
Romulo Pinho [Fri, 7 Oct 2011 09:41:51 +0000 (11:41 +0200)]
calculation of an RTstruct's motion amplitude

13 years agoclitkImageStatistics - small robustness issue
Romulo Pinho [Thu, 6 Oct 2011 15:17:35 +0000 (17:17 +0200)]
clitkImageStatistics - small robustness issue

13 years agoclitkImageStatistics - support for 4D images
Romulo Pinho [Thu, 6 Oct 2011 15:03:06 +0000 (17:03 +0200)]
clitkImageStatistics - support for 4D images

- label mask may also be (n-1)D

13 years agoAdd an option to the screenshots menu to save all slices (with ROI and transparency)
David Sarrut [Wed, 5 Oct 2011 09:05:59 +0000 (11:05 +0200)]
Add an option to the screenshots menu to save all slices (with ROI and transparency)

13 years agoRemove debug and check that options are correct
David Sarrut [Wed, 5 Oct 2011 09:05:27 +0000 (11:05 +0200)]
Remove debug and check that options are correct

13 years agoAdd station 5 and 6
David Sarrut [Wed, 5 Oct 2011 09:05:07 +0000 (11:05 +0200)]
Add station 5 and 6

13 years agoAdd Station 5 and 6
David Sarrut [Wed, 5 Oct 2011 09:04:42 +0000 (11:04 +0200)]
Add Station 5 and 6

13 years agoCorrect bug in support for 4RL
David Sarrut [Wed, 5 Oct 2011 09:04:29 +0000 (11:04 +0200)]
Correct bug in support for 4RL

13 years agoStation 4RL is not ok
David Sarrut [Wed, 5 Oct 2011 09:04:11 +0000 (11:04 +0200)]
Station 4RL is not ok

13 years agoCorrect PrintOptions
David Sarrut [Wed, 5 Oct 2011 09:03:46 +0000 (11:03 +0200)]
Correct PrintOptions

13 years agoAdd "SliceBySliceBuildLineSegmentAccordingToMinimalDistanceBetweenStructures" (and...
David Sarrut [Wed, 5 Oct 2011 09:02:45 +0000 (11:02 +0200)]
Add "SliceBySliceBuildLineSegmentAccordingToMinimalDistanceBetweenStructures" (and win the best price for the longest function name in clitk)
Add DistanceMap
Add ComputeClosestPoint
Correct JoinSlices (with ImageBase instead of Image as option)

13 years agoclitkImageStatistics supports multi-channel images
Romulo Pinho [Tue, 4 Oct 2011 14:40:04 +0000 (16:40 +0200)]
clitkImageStatistics supports multi-channel images

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Tue, 4 Oct 2011 07:25:04 +0000 (09:25 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Mon, 3 Oct 2011 15:26:54 +0000 (17:26 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agomore changes related to fusion control
Romulo Pinho [Mon, 3 Oct 2011 15:26:28 +0000 (17:26 +0200)]
more changes related to fusion control

13 years agocorrections in overlay opacity and threshold
Romulo Pinho [Mon, 3 Oct 2011 15:24:40 +0000 (17:24 +0200)]
corrections in overlay opacity and threshold

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Mon, 3 Oct 2011 06:27:21 +0000 (08:27 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agohow to make nightly builds and to test tools
mpech [Thu, 29 Sep 2011 14:08:44 +0000 (16:08 +0200)]
how to make nightly builds and to test tools

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Thu, 29 Sep 2011 13:57:06 +0000 (15:57 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdd checking of the options
David Sarrut [Thu, 29 Sep 2011 10:53:48 +0000 (12:53 +0200)]
Add checking of the options

13 years agoremove options for some stations
David Sarrut [Thu, 29 Sep 2011 05:27:02 +0000 (07:27 +0200)]
remove options for some stations

13 years agoNew version of S3P (simpler)
David Sarrut [Thu, 29 Sep 2011 05:26:29 +0000 (07:26 +0200)]
New version of S3P (simpler)

13 years agoAdd S4ARL station extraction
David Sarrut [Thu, 29 Sep 2011 05:25:55 +0000 (07:25 +0200)]
Add S4ARL station extraction

13 years agosmall bug (current step number)
David Sarrut [Thu, 29 Sep 2011 05:25:27 +0000 (07:25 +0200)]
small bug (current step number)

13 years agoRemove VertebralBody
David Sarrut [Thu, 29 Sep 2011 05:25:08 +0000 (07:25 +0200)]
Remove VertebralBody

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Thu, 29 Sep 2011 05:24:31 +0000 (07:24 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agosorted directory is put outside the original one
Gauthier Bouilhol [Wed, 28 Sep 2011 16:56:42 +0000 (18:56 +0200)]
sorted directory is put outside the original one

13 years agoprint directory when no phase found
Gauthier Bouilhol [Wed, 28 Sep 2011 16:55:51 +0000 (18:55 +0200)]
print directory when no phase found

13 years agotest for warpImage 3d
mpech [Wed, 28 Sep 2011 15:10:21 +0000 (17:10 +0200)]
test for warpImage 3d

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Wed, 28 Sep 2011 14:37:25 +0000 (16:37 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoforgot to uncomment...
mpech [Wed, 28 Sep 2011 14:25:35 +0000 (16:25 +0200)]
forgot to uncomment...

13 years agowhen a tool failed, no mhd was produced but the test still succeeded.
mpech [Wed, 28 Sep 2011 14:23:57 +0000 (16:23 +0200)]
when a tool failed, no mhd was produced but the test still succeeded.

13 years agotesting tools doesnt require vv
mpech [Wed, 28 Sep 2011 12:48:26 +0000 (14:48 +0200)]
testing tools doesnt require vv

13 years agocl was not valid for setBackground
mpech [Wed, 28 Sep 2011 09:25:17 +0000 (11:25 +0200)]
cl was not valid for setBackground

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Wed, 28 Sep 2011 05:47:18 +0000 (07:47 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agosearch prefix and suffix
Gauthier Bouilhol [Tue, 27 Sep 2011 16:15:11 +0000 (18:15 +0200)]
search prefix and suffix

13 years agoclitkSetBackground and renaming binarize
mpech [Tue, 27 Sep 2011 14:40:27 +0000 (16:40 +0200)]
clitkSetBackground and renaming binarize

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Mon, 26 Sep 2011 15:18:48 +0000 (17:18 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agomhd files are compared ignoring the ITK_InputFilterName line added by itkv4
mpech [Mon, 26 Sep 2011 09:25:08 +0000 (11:25 +0200)]
mhd files are compared ignoring the ITK_InputFilterName line added by itkv4

13 years agoNow inherit from clitkStructuresExtractionFilter
David Sarrut [Mon, 26 Sep 2011 07:08:38 +0000 (09:08 +0200)]
Now inherit from clitkStructuresExtractionFilter

13 years agoNow inherit from clitkStructuresExtractionFilter
David Sarrut [Mon, 26 Sep 2011 07:08:21 +0000 (09:08 +0200)]
Now inherit from clitkStructuresExtractionFilter

13 years agoSimplification of options
David Sarrut [Mon, 26 Sep 2011 07:08:00 +0000 (09:08 +0200)]
Simplification of options

13 years agoCosmetic
David Sarrut [Mon, 26 Sep 2011 07:07:48 +0000 (09:07 +0200)]
Cosmetic

13 years agoAdapted with RelativePostion list management
David Sarrut [Mon, 26 Sep 2011 07:07:31 +0000 (09:07 +0200)]
Adapted with RelativePostion list management

13 years agoAdd dependence with RelativePosition ggo
David Sarrut [Mon, 26 Sep 2011 07:07:09 +0000 (09:07 +0200)]
Add dependence with RelativePosition ggo

13 years agoRemove debug messages
David Sarrut [Mon, 26 Sep 2011 07:06:48 +0000 (09:06 +0200)]
Remove debug messages

13 years agoRemove debug
David Sarrut [Mon, 26 Sep 2011 07:06:35 +0000 (09:06 +0200)]
Remove debug

13 years agoCosmetic
David Sarrut [Mon, 26 Sep 2011 07:05:51 +0000 (09:05 +0200)]
Cosmetic

13 years agoSmall options modification
David Sarrut [Mon, 26 Sep 2011 07:05:30 +0000 (09:05 +0200)]
Small options modification

13 years agoComment ImageToDicomRT because does not work
David Sarrut [Mon, 26 Sep 2011 07:05:04 +0000 (09:05 +0200)]
Comment ImageToDicomRT because does not work

13 years agoFile to manage a list of RelativePosition filters
David Sarrut [Mon, 26 Sep 2011 07:04:33 +0000 (09:04 +0200)]
File to manage a list of RelativePosition filters

13 years agoExtraction of S1RL
David Sarrut [Mon, 26 Sep 2011 07:04:02 +0000 (09:04 +0200)]
Extraction of S1RL

13 years agoChange "UseASingleObjectConnectedComponentBySlice" by "UseTheLargestObjectCCL"
David Sarrut [Mon, 26 Sep 2011 07:03:33 +0000 (09:03 +0200)]
Change "UseASingleObjectConnectedComponentBySlice" by "UseTheLargestObjectCCL"

13 years agoAdd "Or" function
David Sarrut [Mon, 26 Sep 2011 07:01:56 +0000 (09:01 +0200)]
Add "Or" function

13 years agoAdd PrintOptions and change orientation type names
David Sarrut [Mon, 26 Sep 2011 07:01:31 +0000 (09:01 +0200)]
Add PrintOptions and change orientation type names

13 years agoAdd VerboseImageSize flag
David Sarrut [Mon, 26 Sep 2011 07:00:50 +0000 (09:00 +0200)]
Add VerboseImageSize flag

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Mon, 26 Sep 2011 07:00:23 +0000 (09:00 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoinstallation of more scripts
dbcache [Thu, 22 Sep 2011 12:42:38 +0000 (14:42 +0200)]
installation of more scripts

13 years agomorphoMath tests
mpech [Wed, 21 Sep 2011 15:52:55 +0000 (17:52 +0200)]
morphoMath tests

13 years agotest for lung3d.mhd
mpech [Wed, 21 Sep 2011 14:31:21 +0000 (16:31 +0200)]
test for lung3d.mhd

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Wed, 21 Sep 2011 09:29:06 +0000 (11:29 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Wed, 21 Sep 2011 07:51:29 +0000 (09:51 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agosupport for mha images
Romulo Pinho [Tue, 20 Sep 2011 16:47:52 +0000 (18:47 +0200)]
support for mha images

- another patch by Joël

13 years agocomparing raw files automatically. refFile can end with .mhd or not
mpech [Tue, 20 Sep 2011 15:28:53 +0000 (17:28 +0200)]
comparing raw files automatically. refFile can end with .mhd or not

13 years agoadd tests for imageArithm
mpech [Tue, 20 Sep 2011 13:53:11 +0000 (15:53 +0200)]
add tests for imageArithm

13 years agoundoing StructureSet-related patch
Romulo Pinho [Mon, 19 Sep 2011 11:56:11 +0000 (13:56 +0200)]
undoing StructureSet-related patch

- the one sent by Joël

13 years agoAttempt to manually adjust the layout of the overlay panel for fusion to minimize...
Simon Rit [Sat, 17 Sep 2011 21:08:09 +0000 (17:08 -0400)]
Attempt to manually adjust the layout of the overlay panel for fusion to minimize its width

13 years agoFiles were not opened in binary mode which caused problems with vox files under windows
Simon Rit [Fri, 16 Sep 2011 16:29:36 +0000 (18:29 +0200)]
Files were not opened in binary mode which caused problems with vox files under windows

13 years agoDo both OuputDebugString and standard output for DD on Windows
Simon Rit [Fri, 16 Sep 2011 16:22:02 +0000 (18:22 +0200)]
Do both OuputDebugString and standard output for DD on Windows

13 years agoBug/issue 704
Romulo Pinho [Fri, 16 Sep 2011 09:23:42 +0000 (11:23 +0200)]
Bug/issue 704

- Made clitkPadImage generic (no support for 4D images for the moment).

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Fri, 16 Sep 2011 09:18:50 +0000 (11:18 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoreplacing \r\n by \n in generated mhd files when running toolTestRunner
mpech [Fri, 16 Sep 2011 09:12:43 +0000 (11:12 +0200)]
replacing \r\n by \n in generated mhd files when running toolTestRunner

13 years agoNo .gitignore file Joël! Put .gitignore in your .gitignore file.
Simon Rit [Wed, 14 Sep 2011 11:18:24 +0000 (13:18 +0200)]
No .gitignore file Joël! Put .gitignore in your .gitignore file.

13 years agofiner control over fusion transparency
Romulo Pinho [Tue, 13 Sep 2011 15:36:36 +0000 (17:36 +0200)]
finer control over fusion transparency

- addition of a spin box to set the values

13 years agoapplying another patch from Joel
Romulo Pinho [Tue, 13 Sep 2011 14:07:22 +0000 (16:07 +0200)]
applying another patch from Joel

13 years agopatches sent from Joel Schaerer
Romulo Pinho [Tue, 13 Sep 2011 08:39:33 +0000 (10:39 +0200)]
patches sent from Joel Schaerer

13 years agoitkv4 migration
Vivien Delmon [Mon, 12 Sep 2011 14:49:49 +0000 (16:49 +0200)]
itkv4 migration

- Add call to SetDirectionCollapseToSubmatrix needed by the
  ExtractImageFilter.

13 years agoitk4 Remove ITK_USE_OPTIMIZED_REGISTRATION_METHODS
Vivien Delmon [Mon, 12 Sep 2011 14:45:03 +0000 (16:45 +0200)]
itk4 Remove ITK_USE_OPTIMIZED_REGISTRATION_METHODS

- Bypass all ITK_USE_OPTIMIZED_REGISTRATION_METHODS with ITK 4. All
optimized version are now the normal version in itk4.
- Include itkImageToImageMetric.h instead of itkOptImageToImageMetric.h
- Rename GetJacobian to ComputeJacobianWithRespectToParameters.

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
David Sarrut [Mon, 12 Sep 2011 09:36:59 +0000 (11:36 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Fri, 9 Sep 2011 09:03:42 +0000 (11:03 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoerror in the install of segmentation tools
Romulo Pinho [Fri, 9 Sep 2011 09:03:00 +0000 (11:03 +0200)]
error in the install of segmentation tools

13 years agoitk4 Rename DeformationField to DisplacementField
Vivien Delmon [Tue, 6 Sep 2011 09:42:38 +0000 (11:42 +0200)]
itk4 Rename DeformationField to DisplacementField

13 years agoRevert "[BUG] Use POSIX local before call to GDCM"
Vivien Delmon [Mon, 5 Sep 2011 15:20:05 +0000 (17:20 +0200)]
Revert "[BUG] Use POSIX local before call to GDCM"

This reverts commit a1dbb1f955409410f9402f9f257482a03bb5d5d6.
Corrected by 98eb0c23b8066792d7a77e571fb7d48c9fe02db6.

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Mon, 5 Sep 2011 15:17:56 +0000 (17:17 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server