]> Creatis software - clitk.git/log
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11 years agofusion sequence: artificially thicken the US images to avoid slices being *hidden...
rblanc [Mon, 22 Apr 2013 16:47:38 +0000 (18:47 +0200)]
fusion sequence: artificially thicken the US images to avoid slices being *hidden behind*, and fixed some errors with close/reload

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 8 Apr 2013 06:18:35 +0000 (08:18 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoAdd option to read Elastix transform (3D affine)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add option to read Elastix transform (3D affine)

11 years agoFix deprecated warning (Begin -> GoToBegin)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Fix deprecated warning (Begin -> GoToBegin)

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
rblanc [Tue, 2 Apr 2013 14:34:41 +0000 (16:34 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoupdated clitkBinaryImageToMesh, added the possibility to write a vtkPolyData output...
rblanc [Tue, 2 Apr 2013 14:34:33 +0000 (16:34 +0200)]
updated clitkBinaryImageToMesh, added the possibility to write a vtkPolyData output file + fixed documentation

11 years agosmall fixes in fusion sequence visualization mode
rblanc [Tue, 2 Apr 2013 13:47:30 +0000 (15:47 +0200)]
small fixes in fusion sequence visualization mode

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Tue, 2 Apr 2013 08:17:06 +0000 (10:17 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoadd nbewnew parameters to SliceBySliceSetBackgroundFromLineSeparation
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
add nbewnew parameters to SliceBySliceSetBackgroundFromLineSeparation

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Fri, 29 Mar 2013 15:27:49 +0000 (16:27 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoadded metadata to vv
Benoît Presles [Fri, 29 Mar 2013 15:26:58 +0000 (16:26 +0100)]
added metadata to vv

11 years agoFixed problem with unsigned short
François Smekens [Wed, 20 Mar 2013 17:31:00 +0000 (18:31 +0100)]
Fixed problem with unsigned short

11 years agoXrad image reader
Simon Rit [Wed, 20 Mar 2013 15:30:40 +0000 (16:30 +0100)]
Xrad image reader

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Thu, 7 Mar 2013 10:09:48 +0000 (11:09 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 6 Mar 2013 12:25:01 +0000 (13:25 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agomode is not mandatory since a default value is provided
Simon Rit [Tue, 5 Mar 2013 14:43:37 +0000 (15:43 +0100)]
mode is not mandatory since a default value is provided

11 years agoImproved robustness with Esrf reader
Simon Rit [Tue, 5 Mar 2013 10:54:08 +0000 (11:54 +0100)]
Improved robustness with Esrf reader

11 years agoAdd (nightly) to NSIS_DISPLAY_NAME for vv install on windows
Vivien Delmon [Tue, 5 Mar 2013 09:29:39 +0000 (10:29 +0100)]
Add (nightly) to NSIS_DISPLAY_NAME for vv install on windows

11 years agoAdd bin directory to the start menu link for windows
Vivien Delmon [Mon, 4 Mar 2013 16:14:38 +0000 (17:14 +0100)]
Add bin directory to the start menu link for windows

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 4 Mar 2013 15:44:55 +0000 (16:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoAdd CMake entry to compile clitkMaskLandmarks
Vivien Delmon [Mon, 4 Mar 2013 15:29:30 +0000 (16:29 +0100)]
Add CMake entry to compile clitkMaskLandmarks

11 years agoRemove manual RPATH settings
Vivien Delmon [Mon, 4 Mar 2013 15:26:14 +0000 (16:26 +0100)]
Remove manual RPATH settings

- RPATH are set in the main CMakeLists.txt by this line:
SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)

11 years agoAdd a nightly option to allow install of both vv and vv-nightly
Vivien Delmon [Mon, 4 Mar 2013 15:03:11 +0000 (16:03 +0100)]
Add a nightly option to allow install of both vv and vv-nightly

11 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 4 Mar 2013 14:52:20 +0000 (15:52 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

11 years agoAdd -no-glib to qt flags
Vivien Delmon [Mon, 4 Mar 2013 14:51:41 +0000 (15:51 +0100)]
Add -no-glib to qt flags

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Mon, 4 Mar 2013 06:43:22 +0000 (07:43 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoRolled back to middle slice on first load
Simon Rit [Mon, 4 Mar 2013 06:41:53 +0000 (07:41 +0100)]
Rolled back to middle slice on first load

11 years agoRolled back default tab to images
Simon Rit [Sat, 2 Mar 2013 15:18:25 +0000 (16:18 +0100)]
Rolled back default tab to images

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Wed, 27 Feb 2013 17:52:30 +0000 (18:52 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoAdd a way to deactivate libstatgrab when installed.
Vivien Delmon [Wed, 27 Feb 2013 14:51:50 +0000 (15:51 +0100)]
Add a way to deactivate libstatgrab when installed.

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 26 Feb 2013 17:45:03 +0000 (18:45 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoRevert "new tool: clitkDicomRTDose2Image"
Romulo Pinho [Tue, 26 Feb 2013 14:28:12 +0000 (15:28 +0100)]
Revert "new tool: clitkDicomRTDose2Image"

This reverts commit 9c1d9afdf7f7f89aecc989b0a159d22a3745cfe2.

11 years agocorrected RTDOSE I/O with GDCM 2.x
Romulo Pinho [Tue, 26 Feb 2013 14:24:20 +0000 (15:24 +0100)]
corrected RTDOSE I/O with GDCM 2.x

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 26 Feb 2013 10:51:04 +0000 (11:51 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoupdated experimental fusion sequence visualization mode to enable temporal linking
rblanc [Tue, 26 Feb 2013 09:40:52 +0000 (10:40 +0100)]
updated experimental fusion sequence visualization mode to enable temporal linking

11 years agonew tool: clitkDicomRTDose2Image
Romulo Pinho [Tue, 26 Feb 2013 09:07:56 +0000 (10:07 +0100)]
new tool: clitkDicomRTDose2Image

- takes into account the scale factor not used by clitkDicom2Image

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Mon, 25 Feb 2013 16:51:59 +0000 (17:51 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoPatch ggo doc
Vivien Delmon [Mon, 25 Feb 2013 16:50:19 +0000 (17:50 +0100)]
Patch ggo doc

11 years agoPatch ggo doc
Vivien Delmon [Mon, 25 Feb 2013 16:49:37 +0000 (17:49 +0100)]
Patch ggo doc

11 years agoAdd svl to supported image types
Vivien Delmon [Mon, 25 Feb 2013 16:47:56 +0000 (17:47 +0100)]
Add svl to supported image types

11 years agoNew tool to keep points in a mask
Vivien Delmon [Mon, 25 Feb 2013 16:35:08 +0000 (17:35 +0100)]
New tool to keep points in a mask

11 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 25 Feb 2013 16:34:46 +0000 (17:34 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

11 years agoConflict GDCM / private feature
Vivien Delmon [Mon, 25 Feb 2013 16:32:34 +0000 (17:32 +0100)]
Conflict GDCM / private feature

- Unregister GDCM and register it after clitk readers so it's called
after private features

11 years agoAdd setRadius option
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add setRadius option

11 years agoIn SliceBySliceSetBackgroundFromLineSeparation add keepIfEqual option
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
In SliceBySliceSetBackgroundFromLineSeparation add keepIfEqual option

11 years agoRemove debug message
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Remove debug message

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Mon, 18 Feb 2013 08:41:57 +0000 (09:41 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 13 Feb 2013 15:47:52 +0000 (16:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoPortability issue: two files had the same names except for the case
Simon Rit [Wed, 13 Feb 2013 15:24:00 +0000 (16:24 +0100)]
Portability issue: two files had the same names except for the case

11 years agoallows negative values in VV's image/scalar arithm tool
Romulo Pinho [Wed, 13 Feb 2013 12:30:35 +0000 (13:30 +0100)]
allows negative values in VV's image/scalar arithm tool

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Mon, 11 Feb 2013 08:51:15 +0000 (09:51 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 11 Feb 2013 06:51:50 +0000 (07:51 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoclitkDicomRTStruct2Image: small correction in help message
Romulo Pinho [Fri, 8 Feb 2013 12:21:14 +0000 (13:21 +0100)]
clitkDicomRTStruct2Image: small correction in help message

11 years agoclitkDicomRTStruct2Image: new features
Romulo Pinho [Fri, 8 Feb 2013 12:13:13 +0000 (13:13 +0100)]
clitkDicomRTStruct2Image: new features

- support conversion given ROI name or substring

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 5 Feb 2013 00:10:15 +0000 (01:10 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoaddition of verbose messages
Romulo Pinho [Tue, 5 Feb 2013 00:05:52 +0000 (01:05 +0100)]
addition of verbose messages

11 years agoremoving debug messages
Romulo Pinho [Tue, 5 Feb 2013 00:03:56 +0000 (01:03 +0100)]
removing debug messages

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Mon, 4 Feb 2013 18:22:31 +0000 (19:22 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 1 Feb 2013 16:00:35 +0000 (17:00 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agofixed root cmake lookup
Pierre Gueth [Fri, 1 Feb 2013 15:29:52 +0000 (16:29 +0100)]
fixed root cmake lookup

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Fri, 1 Feb 2013 08:11:06 +0000 (09:11 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

Conflicts:
vv/vvSlicer.cxx

11 years agoChanges rounding to nearest slice with a comment to explain that the
Simon Rit [Fri, 1 Feb 2013 07:45:30 +0000 (08:45 +0100)]
Changes rounding to nearest slice with a comment to explain that the
slice might never be visible (bug #1883).

11 years agoRolled back to previous rounding to reslice overlay/fusion.
Simon Rit [Fri, 1 Feb 2013 07:45:30 +0000 (08:45 +0100)]
Rolled back to previous rounding to reslice overlay/fusion.

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 1 Feb 2013 06:59:30 +0000 (07:59 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoVectorArithm: make Norm(0) = 0
Romulo Pinho [Thu, 31 Jan 2013 22:12:33 +0000 (23:12 +0100)]
VectorArithm: make Norm(0) = 0

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 31 Jan 2013 15:27:16 +0000 (16:27 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agosupport different series in a single dicom folder in Dicom2Image
Romulo Pinho [Thu, 31 Jan 2013 15:26:19 +0000 (16:26 +0100)]
support different series in a single dicom folder in Dicom2Image

11 years agoadded clitkVectorArithm tool (correction in commit)
Romulo Pinho [Thu, 31 Jan 2013 15:23:41 +0000 (16:23 +0100)]
added clitkVectorArithm tool (correction in commit)

    - removed all vector support from clitkImageArithm

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 31 Jan 2013 14:55:20 +0000 (15:55 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoAdded clitkVectorArithm tool
Romulo Pinho [Thu, 31 Jan 2013 14:54:40 +0000 (15:54 +0100)]
Added clitkVectorArithm tool

- removed all vector support from clitkImageArithm

11 years agoCosmetic (display station name)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Cosmetic (display station name)

11 years agoCorrect bug to compute 2NotIn1
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Correct bug to compute 2NotIn1

11 years agoAdd option for newStep
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add option for newStep

11 years agoAdd findAndReplace
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add findAndReplace

11 years agoFixes for bug #1883
Simon Rit [Thu, 31 Jan 2013 08:29:14 +0000 (09:29 +0100)]
Fixes for bug #1883

11 years agoFix for bug 1882
Simon Rit [Wed, 30 Jan 2013 10:08:59 +0000 (11:08 +0100)]
Fix for bug 1882

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Tue, 29 Jan 2013 07:55:18 +0000 (08:55 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agocorrect bugs related to new window/level option
Romulo Pinho [Fri, 25 Jan 2013 13:51:47 +0000 (14:51 +0100)]
correct bugs related to new window/level option

- also refactored to avoid similar problems in the future

11 years agoadded tool to interpolate VFs
Romulo Pinho [Thu, 24 Jan 2013 13:26:49 +0000 (14:26 +0100)]
added tool to interpolate VFs

- support for float/double;Dim=3;Comp=3; vectors only

11 years agoadded window/level preset for head/brain
Romulo Pinho [Thu, 24 Jan 2013 13:25:06 +0000 (14:25 +0100)]
added window/level preset for head/brain

- same as Focal

11 years agoAdd nb of pixels in A and not in B (and reverse)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add nb of pixels in A and not in B (and reverse)

11 years agoIn CropImageAlong, correct small bug
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
In CropImageAlong, correct small bug

11 years agoAdd verbose options
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add verbose options

11 years agoAdd verbose optinos
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add verbose optinos

11 years agoCrop label image like input before stat
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Crop label image like input before stat

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 22 Jan 2013 09:08:26 +0000 (10:08 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 22 Jan 2013 08:27:24 +0000 (09:27 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 21 Jan 2013 07:49:52 +0000 (08:49 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 17 Jan 2013 08:19:36 +0000 (09:19 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agocircumventing apparent bug in BSplineTransform of ITK 4.x
Romulo Pinho [Thu, 17 Jan 2013 08:15:48 +0000 (09:15 +0100)]
circumventing apparent bug in BSplineTransform of ITK 4.x

- SetCoefficientImages doesn't seem to take all images of fields of the flat vector image
- Created the flat parameters-image myself and used SetParameters() instead

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
rblanc [Tue, 15 Jan 2013 14:03:10 +0000 (15:03 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

Conflicts:
vv/vvMainWindow.cxx
vv/vvMainWindow.h

11 years agoimproved behavior when closing an image related to a fusion sequence (not fully finished)
rblanc [Tue, 15 Jan 2013 13:52:07 +0000 (14:52 +0100)]
improved behavior when closing an image related to a fusion sequence (not fully finished)

11 years agoFix for bug #1881
Simon Rit [Tue, 15 Jan 2013 13:35:30 +0000 (14:35 +0100)]
Fix for bug #1881

11 years agoAdd K1 accessors
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add K1 accessors

11 years agoitk4.3 compatibility
Vivien Delmon [Mon, 14 Jan 2013 17:16:48 +0000 (18:16 +0100)]
itk4.3 compatibility

- Use Update instead of StartRegistration

11 years agoitk4.3 compatibility
Vivien Delmon [Mon, 14 Jan 2013 15:50:02 +0000 (16:50 +0100)]
itk4.3 compatibility

- itkCompose3DVectorImageFilter is now itkComposeImageFilter

11 years agoRemove itkAnalyzeImageIO
Vivien Delmon [Mon, 14 Jan 2013 15:27:24 +0000 (16:27 +0100)]
Remove itkAnalyzeImageIO

- itkAnalyzeImageIO was used to force identity matrix when reading
analyze images. itk now uses another reader that does not apply fancy
matrix when reading analyze file, previous code is not needed anymore.

11 years agoCompatibility
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Compatibility

11 years agoAdd border flag to auto crop
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add border flag to auto crop

11 years agoDisplay k1 and set k1 to relPosFilter
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Display k1 and set k1 to relPosFilter