]>
Creatis software - clitk.git/log
rblanc [Mon, 22 Apr 2013 16:47:38 +0000 (18:47 +0200)]
fusion sequence: artificially thicken the US images to avoid slices being *hidden behind*, and fixed some errors with close/reload
David Sarrut [Mon, 8 Apr 2013 06:18:35 +0000 (08:18 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add option to read Elastix transform (3D affine)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Fix deprecated warning (Begin -> GoToBegin)
rblanc [Tue, 2 Apr 2013 14:34:41 +0000 (16:34 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
rblanc [Tue, 2 Apr 2013 14:34:33 +0000 (16:34 +0200)]
updated clitkBinaryImageToMesh, added the possibility to write a vtkPolyData output file + fixed documentation
rblanc [Tue, 2 Apr 2013 13:47:30 +0000 (15:47 +0200)]
small fixes in fusion sequence visualization mode
David Sarrut [Tue, 2 Apr 2013 08:17:06 +0000 (10:17 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
add nbewnew parameters to SliceBySliceSetBackgroundFromLineSeparation
Benoît Presles [Fri, 29 Mar 2013 15:27:49 +0000 (16:27 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Fri, 29 Mar 2013 15:26:58 +0000 (16:26 +0100)]
added metadata to vv
François Smekens [Wed, 20 Mar 2013 17:31:00 +0000 (18:31 +0100)]
Fixed problem with unsigned short
Simon Rit [Wed, 20 Mar 2013 15:30:40 +0000 (16:30 +0100)]
Xrad image reader
Benoît Presles [Thu, 7 Mar 2013 10:09:48 +0000 (11:09 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 6 Mar 2013 12:25:01 +0000 (13:25 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 5 Mar 2013 14:43:37 +0000 (15:43 +0100)]
mode is not mandatory since a default value is provided
Simon Rit [Tue, 5 Mar 2013 10:54:08 +0000 (11:54 +0100)]
Improved robustness with Esrf reader
Vivien Delmon [Tue, 5 Mar 2013 09:29:39 +0000 (10:29 +0100)]
Add (nightly) to NSIS_DISPLAY_NAME for vv install on windows
Vivien Delmon [Mon, 4 Mar 2013 16:14:38 +0000 (17:14 +0100)]
Add bin directory to the start menu link for windows
David Sarrut [Mon, 4 Mar 2013 15:44:55 +0000 (16:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 4 Mar 2013 15:29:30 +0000 (16:29 +0100)]
Add CMake entry to compile clitkMaskLandmarks
Vivien Delmon [Mon, 4 Mar 2013 15:26:14 +0000 (16:26 +0100)]
Remove manual RPATH settings
- RPATH are set in the main CMakeLists.txt by this line:
SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
Vivien Delmon [Mon, 4 Mar 2013 15:03:11 +0000 (16:03 +0100)]
Add a nightly option to allow install of both vv and vv-nightly
Vivien Delmon [Mon, 4 Mar 2013 14:52:20 +0000 (15:52 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 4 Mar 2013 14:51:41 +0000 (15:51 +0100)]
Add -no-glib to qt flags
Simon Rit [Mon, 4 Mar 2013 06:43:22 +0000 (07:43 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Mon, 4 Mar 2013 06:41:53 +0000 (07:41 +0100)]
Rolled back to middle slice on first load
Simon Rit [Sat, 2 Mar 2013 15:18:25 +0000 (16:18 +0100)]
Rolled back default tab to images
Benoît Presles [Wed, 27 Feb 2013 17:52:30 +0000 (18:52 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 27 Feb 2013 14:51:50 +0000 (15:51 +0100)]
Add a way to deactivate libstatgrab when installed.
Benoît Presles [Tue, 26 Feb 2013 17:45:03 +0000 (18:45 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 26 Feb 2013 14:28:12 +0000 (15:28 +0100)]
Revert "new tool: clitkDicomRTDose2Image"
This reverts commit
9c1d9afdf7f7f89aecc989b0a159d22a3745cfe2 .
Romulo Pinho [Tue, 26 Feb 2013 14:24:20 +0000 (15:24 +0100)]
corrected RTDOSE I/O with GDCM 2.x
Romulo Pinho [Tue, 26 Feb 2013 10:51:04 +0000 (11:51 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
rblanc [Tue, 26 Feb 2013 09:40:52 +0000 (10:40 +0100)]
updated experimental fusion sequence visualization mode to enable temporal linking
Romulo Pinho [Tue, 26 Feb 2013 09:07:56 +0000 (10:07 +0100)]
new tool: clitkDicomRTDose2Image
- takes into account the scale factor not used by clitkDicom2Image
Benoît Presles [Mon, 25 Feb 2013 16:51:59 +0000 (17:51 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 25 Feb 2013 16:50:19 +0000 (17:50 +0100)]
Patch ggo doc
Vivien Delmon [Mon, 25 Feb 2013 16:49:37 +0000 (17:49 +0100)]
Patch ggo doc
Vivien Delmon [Mon, 25 Feb 2013 16:47:56 +0000 (17:47 +0100)]
Add svl to supported image types
Vivien Delmon [Mon, 25 Feb 2013 16:35:08 +0000 (17:35 +0100)]
New tool to keep points in a mask
Vivien Delmon [Mon, 25 Feb 2013 16:34:46 +0000 (17:34 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 25 Feb 2013 16:32:34 +0000 (17:32 +0100)]
Conflict GDCM / private feature
- Unregister GDCM and register it after clitk readers so it's called
after private features
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add setRadius option
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
In SliceBySliceSetBackgroundFromLineSeparation add keepIfEqual option
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Remove debug message
Benoît Presles [Mon, 18 Feb 2013 08:41:57 +0000 (09:41 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 13 Feb 2013 15:47:52 +0000 (16:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 13 Feb 2013 15:24:00 +0000 (16:24 +0100)]
Portability issue: two files had the same names except for the case
Romulo Pinho [Wed, 13 Feb 2013 12:30:35 +0000 (13:30 +0100)]
allows negative values in VV's image/scalar arithm tool
Benoît Presles [Mon, 11 Feb 2013 08:51:15 +0000 (09:51 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 11 Feb 2013 06:51:50 +0000 (07:51 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 8 Feb 2013 12:21:14 +0000 (13:21 +0100)]
clitkDicomRTStruct2Image: small correction in help message
Romulo Pinho [Fri, 8 Feb 2013 12:13:13 +0000 (13:13 +0100)]
clitkDicomRTStruct2Image: new features
- support conversion given ROI name or substring
Romulo Pinho [Tue, 5 Feb 2013 00:10:15 +0000 (01:10 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 5 Feb 2013 00:05:52 +0000 (01:05 +0100)]
addition of verbose messages
Romulo Pinho [Tue, 5 Feb 2013 00:03:56 +0000 (01:03 +0100)]
removing debug messages
Benoît Presles [Mon, 4 Feb 2013 18:22:31 +0000 (19:22 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 1 Feb 2013 16:00:35 +0000 (17:00 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Pierre Gueth [Fri, 1 Feb 2013 15:29:52 +0000 (16:29 +0100)]
fixed root cmake lookup
Simon Rit [Fri, 1 Feb 2013 08:11:06 +0000 (09:11 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Conflicts:
vv/vvSlicer.cxx
Simon Rit [Fri, 1 Feb 2013 07:45:30 +0000 (08:45 +0100)]
Changes rounding to nearest slice with a comment to explain that the
slice might never be visible (bug #1883).
Simon Rit [Fri, 1 Feb 2013 07:45:30 +0000 (08:45 +0100)]
Rolled back to previous rounding to reslice overlay/fusion.
David Sarrut [Fri, 1 Feb 2013 06:59:30 +0000 (07:59 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 31 Jan 2013 22:12:33 +0000 (23:12 +0100)]
VectorArithm: make Norm(0) = 0
Romulo Pinho [Thu, 31 Jan 2013 15:27:16 +0000 (16:27 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 31 Jan 2013 15:26:19 +0000 (16:26 +0100)]
support different series in a single dicom folder in Dicom2Image
Romulo Pinho [Thu, 31 Jan 2013 15:23:41 +0000 (16:23 +0100)]
added clitkVectorArithm tool (correction in commit)
- removed all vector support from clitkImageArithm
Romulo Pinho [Thu, 31 Jan 2013 14:55:20 +0000 (15:55 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 31 Jan 2013 14:54:40 +0000 (15:54 +0100)]
Added clitkVectorArithm tool
- removed all vector support from clitkImageArithm
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Cosmetic (display station name)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Correct bug to compute 2NotIn1
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add option for newStep
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add findAndReplace
Simon Rit [Thu, 31 Jan 2013 08:29:14 +0000 (09:29 +0100)]
Fixes for bug #1883
Simon Rit [Wed, 30 Jan 2013 10:08:59 +0000 (11:08 +0100)]
Fix for bug 1882
David Sarrut [Tue, 29 Jan 2013 07:55:18 +0000 (08:55 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Fri, 25 Jan 2013 13:51:47 +0000 (14:51 +0100)]
correct bugs related to new window/level option
- also refactored to avoid similar problems in the future
Romulo Pinho [Thu, 24 Jan 2013 13:26:49 +0000 (14:26 +0100)]
added tool to interpolate VFs
- support for float/double;Dim=3;Comp=3; vectors only
Romulo Pinho [Thu, 24 Jan 2013 13:25:06 +0000 (14:25 +0100)]
added window/level preset for head/brain
- same as Focal
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add nb of pixels in A and not in B (and reverse)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
In CropImageAlong, correct small bug
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add verbose options
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add verbose optinos
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Crop label image like input before stat
Romulo Pinho [Tue, 22 Jan 2013 09:08:26 +0000 (10:08 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 22 Jan 2013 08:27:24 +0000 (09:27 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 21 Jan 2013 07:49:52 +0000 (08:49 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 17 Jan 2013 08:19:36 +0000 (09:19 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 17 Jan 2013 08:15:48 +0000 (09:15 +0100)]
circumventing apparent bug in BSplineTransform of ITK 4.x
- SetCoefficientImages doesn't seem to take all images of fields of the flat vector image
- Created the flat parameters-image myself and used SetParameters() instead
rblanc [Tue, 15 Jan 2013 14:03:10 +0000 (15:03 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Conflicts:
vv/vvMainWindow.cxx
vv/vvMainWindow.h
rblanc [Tue, 15 Jan 2013 13:52:07 +0000 (14:52 +0100)]
improved behavior when closing an image related to a fusion sequence (not fully finished)
Simon Rit [Tue, 15 Jan 2013 13:35:30 +0000 (14:35 +0100)]
Fix for bug #1881
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add K1 accessors
Vivien Delmon [Mon, 14 Jan 2013 17:16:48 +0000 (18:16 +0100)]
itk4.3 compatibility
- Use Update instead of StartRegistration
Vivien Delmon [Mon, 14 Jan 2013 15:50:02 +0000 (16:50 +0100)]
itk4.3 compatibility
- itkCompose3DVectorImageFilter is now itkComposeImageFilter
Vivien Delmon [Mon, 14 Jan 2013 15:27:24 +0000 (16:27 +0100)]
Remove itkAnalyzeImageIO
- itkAnalyzeImageIO was used to force identity matrix when reading
analyze images. itk now uses another reader that does not apply fancy
matrix when reading analyze file, previous code is not needed anymore.
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Compatibility
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add border flag to auto crop
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Display k1 and set k1 to relPosFilter