]> Creatis software - clitk.git/log
clitk.git
13 years agoAdded HaveSameSize
Simon Rit [Mon, 27 Jun 2011 08:00:25 +0000 (10:00 +0200)]
Added HaveSameSize

13 years agoPortability issue
Simon Rit [Thu, 23 Jun 2011 17:46:07 +0000 (19:46 +0200)]
Portability issue

13 years agoAdded --transform_grid which uses input->GetDirection
Simon Rit [Thu, 23 Jun 2011 17:44:22 +0000 (19:44 +0200)]
Added --transform_grid which uses input->GetDirection
(output->GetDirection is identity) and transform matrix
to determine the output grid.

13 years agoInverse transform matrix to be consistent witk ITK (see longer comment in vvImageRead...
Simon Rit [Thu, 23 Jun 2011 17:41:53 +0000 (19:41 +0200)]
Inverse transform matrix to be consistent witk ITK (see longer comment in vvImageReader.cxx)

13 years agoAccount for itk origin when using itk direction to build vv transform
Simon Rit [Thu, 23 Jun 2011 11:16:58 +0000 (13:16 +0200)]
Account for itk origin when using itk direction to build vv transform

13 years agoAdded ExtractBonesLower2 and FillingLevel options
Simon Rit [Wed, 22 Jun 2011 08:35:11 +0000 (10:35 +0200)]
Added ExtractBonesLower2 and FillingLevel options

13 years agoCopy pasted common.sh code
Simon Rit [Wed, 22 Jun 2011 08:33:44 +0000 (10:33 +0200)]
Copy pasted common.sh code

13 years agosimple tool to create an image with a sphere
Romulo Pinho [Tue, 21 Jun 2011 18:12:50 +0000 (20:12 +0200)]
simple tool to create an image with a sphere

- still to be improved

13 years agojacobian image filter
Romulo Pinho [Tue, 21 Jun 2011 18:10:28 +0000 (20:10 +0200)]
jacobian image filter

- calculate the jacobian of a vector field

13 years agomoved $CLITK3/vv/scripts to $CLITK3/scripts
Romulo Pinho [Tue, 21 Jun 2011 14:00:31 +0000 (16:00 +0200)]
moved $CLITK3/vv/scripts to $CLITK3/scripts

- added create_midP_masks.sh

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Mon, 20 Jun 2011 13:30:43 +0000 (15:30 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agouse of find_xxx to find googleframework and data paths
mpech [Mon, 20 Jun 2011 13:29:07 +0000 (15:29 +0200)]
use of find_xxx to find googleframework and data paths

13 years agoMissing include
Simon Rit [Mon, 20 Jun 2011 08:48:47 +0000 (10:48 +0200)]
Missing include

13 years agouint is not a type
Simon Rit [Sat, 18 Jun 2011 16:21:53 +0000 (18:21 +0200)]
uint is not a type

13 years agoFix for bug #274: move ExtractSlices definition in .h
Simon Rit [Sat, 18 Jun 2011 16:07:14 +0000 (18:07 +0200)]
Fix for bug #274: move ExtractSlices definition in .h

13 years agoOups, wrong exception message
Simon Rit [Fri, 17 Jun 2011 16:53:45 +0000 (18:53 +0200)]
Oups, wrong exception message

13 years agoResample is not robust to i/o spacings with different signs => launch
Simon Rit [Fri, 17 Jun 2011 16:40:45 +0000 (18:40 +0200)]
Resample is not robust to i/o spacings with different signs => launch
exception

13 years agoThe order of the libraries seemed to cause problem. Changed it...
Simon Rit [Thu, 16 Jun 2011 15:13:33 +0000 (17:13 +0200)]
The order of the libraries seemed to cause problem. Changed it...

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Thu, 16 Jun 2011 09:50:44 +0000 (11:50 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoUse Qt variables in vv/CMakeList.txt
Vivien Delmon [Thu, 16 Jun 2011 09:48:39 +0000 (11:48 +0200)]
Use Qt variables in vv/CMakeList.txt

Use ${QT_QTNETWORK_LIBRARY} instead of QtNetwork that didn't worked with
window Qt library named QtNetwork4.lib

13 years agoorientation change should not change T slice
Romulo Pinho [Wed, 15 Jun 2011 15:11:07 +0000 (17:11 +0200)]
orientation change should not change T slice

- time never changes when just the image orientation is changed...

13 years agoFix for bug #609
Simon Rit [Wed, 15 Jun 2011 10:43:05 +0000 (12:43 +0200)]
Fix for bug #609

13 years agoChange key for going to coordinate system origin. Now CTRL+g
Simon Rit [Wed, 15 Jun 2011 08:48:08 +0000 (10:48 +0200)]
Change key for going to coordinate system origin. Now CTRL+g

13 years agoRemoved unused text variable
Simon Rit [Wed, 15 Jun 2011 08:47:36 +0000 (10:47 +0200)]
Removed unused text variable

13 years agoQtNetwork is a required dependency of vvRegisterForm
Simon Rit [Tue, 14 Jun 2011 13:36:30 +0000 (15:36 +0200)]
QtNetwork is a required dependency of vvRegisterForm

13 years agoObsolete header replaced with correct header
mpech [Tue, 14 Jun 2011 11:46:49 +0000 (13:46 +0200)]
Obsolete header replaced with correct header

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Tue, 14 Jun 2011 11:27:45 +0000 (13:27 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agowindows compatibility for tools
mpech [Tue, 14 Jun 2011 11:26:15 +0000 (13:26 +0200)]
windows compatibility for tools
 (size_t vs uint...)
and tests (.lib vs .a)

13 years agoadd QtNetwork for Fedora build
dsarrut [Tue, 14 Jun 2011 11:00:24 +0000 (13:00 +0200)]
add QtNetwork for Fedora build

13 years agoadd QtNetwork for Fedora build
dsarrut [Tue, 14 Jun 2011 10:58:55 +0000 (12:58 +0200)]
add QtNetwork for Fedora build

13 years agoAdd padding in clitkExtractLung
Vivien Delmon [Tue, 14 Jun 2011 08:59:50 +0000 (10:59 +0200)]
Add padding in clitkExtractLung

Add padding around the patient to form one big air area around him.
ExtractLung relies on this assumption which was false for dir-labs
patients cropped around the ribcage.

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Tue, 14 Jun 2011 07:39:28 +0000 (09:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdd test outside SearchForTrackea to avoid infinite loop
Vivien Delmon [Tue, 14 Jun 2011 07:38:15 +0000 (09:38 +0200)]
Add test outside SearchForTrackea to avoid infinite loop

When clitkExtractLung did not find the trackea it looped infinitly.

13 years agoAdd --noAutoCrop option to clitkExtractLung
Vivien Delmon [Tue, 14 Jun 2011 07:35:20 +0000 (09:35 +0200)]
Add --noAutoCrop option to clitkExtractLung

13 years agoRemove comments
dsarrut [Thu, 9 Jun 2011 12:38:42 +0000 (14:38 +0200)]
Remove comments

13 years agoAdd "normalize" and "divide by a scalar"
dsarrut [Thu, 9 Jun 2011 12:36:39 +0000 (14:36 +0200)]
Add "normalize" and "divide by a scalar"

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Thu, 9 Jun 2011 12:35:51 +0000 (14:35 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agostill on bug 375
Romulo Pinho [Thu, 9 Jun 2011 09:52:31 +0000 (11:52 +0200)]
still on bug 375

- image origin is now also updated to cope with crop

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Thu, 9 Jun 2011 09:22:51 +0000 (11:22 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoUpdating reslice filter information in UpdateDisplayExtent was not enough, calling
Simon Rit [Thu, 9 Jun 2011 09:19:48 +0000 (11:19 +0200)]
Updating reslice filter information  in UpdateDisplayExtent was not enough, calling
AdjustResliceToSliceOrientation does a better job although it should not
be necessary.

13 years agoAdded "Reset transformation to identity" in image right-click menu
Simon Rit [Wed, 8 Jun 2011 15:45:12 +0000 (17:45 +0200)]
Added "Reset transformation to identity" in image right-click menu

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Thu, 9 Jun 2011 05:23:05 +0000 (07:23 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agosolved bug 375 (Binarize after crop)
Romulo Pinho [Wed, 8 Jun 2011 16:25:37 +0000 (18:25 +0200)]
solved bug 375 (Binarize after crop)

- image index is now forced to zero after passing through cropping filter
        + apparently solved other crop-related bugs... (please test!)
- also did some refactoring and clean-up

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Wed, 8 Jun 2011 15:44:51 +0000 (17:44 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoRemove trailing whitespace
Vivien Delmon [Wed, 8 Jun 2011 15:34:55 +0000 (17:34 +0200)]
Remove trailing whitespace

13 years agoAdd padding in clitkExtractPatient
Vivien Delmon [Wed, 8 Jun 2011 15:31:33 +0000 (17:31 +0200)]
Add padding in clitkExtractPatient

Add padding around the patient to form one big air area around the
patient. ExtractPatient relies on this assumption which was false for
dir-labs patients cropped around the ribcage.

13 years agoRemoved empty file
Simon Rit [Wed, 8 Jun 2011 13:04:46 +0000 (15:04 +0200)]
Removed empty file

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Wed, 8 Jun 2011 05:39:35 +0000 (07:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 7 Jun 2011 15:01:04 +0000 (17:01 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agosolved bug 442 (2D+t vector field)
Romulo Pinho [Tue, 7 Jun 2011 14:41:18 +0000 (16:41 +0200)]
solved bug 442 (2D+t vector field)

- added another image type: VECTORFIELDWITHTIME

13 years agosolved bug 519 (Fusion flickering)
Romulo Pinho [Tue, 7 Jun 2011 12:46:57 +0000 (14:46 +0200)]
solved bug 519 (Fusion flickering)

13 years agoremoval of threshold test for random point selection
Romulo Pinho [Tue, 7 Jun 2011 10:44:36 +0000 (12:44 +0200)]
removal of threshold test for random point selection

13 years agoremoval of threshold test for point selction
Romulo Pinho [Tue, 7 Jun 2011 08:33:09 +0000 (10:33 +0200)]
removal of threshold test for point selction

13 years agoMerge branch 'master' into blutdirmaster
Romulo Pinho [Tue, 7 Jun 2011 08:04:11 +0000 (10:04 +0200)]
Merge branch 'master' into blutdirmaster

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Tue, 7 Jun 2011 05:27:34 +0000 (07:27 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Mon, 6 Jun 2011 14:26:12 +0000 (16:26 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Mon, 6 Jun 2011 12:40:03 +0000 (14:40 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoTrasnparency of color maps in fusion images
Romulo Pinho [Mon, 6 Jun 2011 12:38:41 +0000 (14:38 +0200)]
Trasnparency of color maps in fusion images

- finer control of transparency is given through a transparency threshold

13 years agoAdd ComputeLabelMap and Clone
dsarrut [Wed, 1 Jun 2011 11:54:00 +0000 (13:54 +0200)]
Add ComputeLabelMap and Clone

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Wed, 1 Jun 2011 09:17:26 +0000 (11:17 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoClean up of unused functions / signals
Simon Rit [Tue, 31 May 2011 15:00:13 +0000 (17:00 +0200)]
Clean up of unused functions / signals

13 years ago[VV] New feature to jump on image origin
Vivien Delmon [Tue, 31 May 2011 14:06:01 +0000 (16:06 +0200)]
[VV] New feature to jump on image origin

13 years agoOnly display data value in corner annotation if ImageActor is visible
Simon Rit [Tue, 31 May 2011 13:07:43 +0000 (15:07 +0200)]
Only display data value in corner annotation if ImageActor is visible

13 years agoAlways UpdateCursorPosition even if ImageActor is not visible, drawing
Simon Rit [Tue, 31 May 2011 13:05:59 +0000 (15:05 +0200)]
Always UpdateCursorPosition even if ImageActor is not visible, drawing
of slicer is handled by the renderer draw mode

13 years agoSetDisplayMode only changes draw mode of renderer
Simon Rit [Tue, 31 May 2011 13:05:17 +0000 (15:05 +0200)]
SetDisplayMode only changes draw mode of renderer

13 years agoRolled back to drawing parent image if it were selected before instead
Simon Rit [Tue, 31 May 2011 12:58:19 +0000 (14:58 +0200)]
Rolled back to drawing parent image if it were selected before instead
of every time parent is changed

13 years agoLet vvSlicer handle visibility
Simon Rit [Tue, 31 May 2011 12:57:57 +0000 (14:57 +0200)]
Let vvSlicer handle visibility

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Tue, 31 May 2011 08:55:43 +0000 (10:55 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Mon, 30 May 2011 17:18:28 +0000 (19:18 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoForce visilibty of base image on first click of him or one of his
Simon Rit [Mon, 30 May 2011 17:15:33 +0000 (19:15 +0200)]
Force visilibty of base image on first click of him or one of his
children

13 years agoUndo previous change: the visibility has to change for correct
Simon Rit [Mon, 30 May 2011 17:15:02 +0000 (19:15 +0200)]
Undo previous change: the visibility has to change for correct
interaction

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Mon, 30 May 2011 16:17:48 +0000 (18:17 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoDo not change visilibity of actors when changing renderer drawing action
Simon Rit [Mon, 30 May 2011 15:44:19 +0000 (17:44 +0200)]
Do not change visilibity of actors when changing renderer drawing action

13 years agoMake fusion, overlay and vf visible by default
Simon Rit [Mon, 30 May 2011 15:21:41 +0000 (17:21 +0200)]
Make fusion, overlay and vf visible by default

13 years agoSet colormaps even if corresponding actor is not visible
Simon Rit [Mon, 30 May 2011 15:07:31 +0000 (17:07 +0200)]
Set colormaps even if corresponding actor is not visible

13 years agoRemoved unused and unuseful function
Simon Rit [Mon, 30 May 2011 13:33:16 +0000 (15:33 +0200)]
Removed unused and unuseful function

13 years agoModified DisplayChanged to master the logic of the image tree and
Simon Rit [Mon, 30 May 2011 13:19:28 +0000 (15:19 +0200)]
Modified DisplayChanged to master the logic of the image tree and
correct some bugs. Added comments to facilitate future debugging (there will be some!)

13 years agodebugging messages
Romulo Pinho [Mon, 30 May 2011 12:48:16 +0000 (14:48 +0200)]
debugging messages

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Mon, 30 May 2011 11:59:26 +0000 (13:59 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdd panel shift in y direction in Cone Beam Project
Vivien Delmon [Mon, 30 May 2011 11:57:42 +0000 (13:57 +0200)]
Add panel shift in y direction in Cone Beam Project

- Add it in the filter.
- Modify the ggo and generic filter to handle it.

13 years agoHandle panel shift in Backprojection
Vivien Delmon [Mon, 30 May 2011 11:54:45 +0000 (13:54 +0200)]
Handle panel shift in Backprojection

Handle panel shift in x and y direction to generate back projected
images.

13 years ago[BUG] use itk interpolator
Vivien Delmon [Mon, 30 May 2011 11:51:55 +0000 (13:51 +0200)]
[BUG] use itk interpolator

Use itk interpolator instead of a home made implementation that
generated NaN in many cases.

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Mon, 30 May 2011 10:41:25 +0000 (12:41 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdded "image" in actor type for SetActorVisibility and added
Simon Rit [Mon, 30 May 2011 08:40:55 +0000 (10:40 +0200)]
Added "image" in actor type for SetActorVisibility and added
corresponding GetActorVisibility.

13 years agoCorrected tooltip with absolute file path
Simon Rit [Mon, 30 May 2011 08:08:48 +0000 (10:08 +0200)]
Corrected tooltip with absolute file path

13 years agoAccessor to list of filenames
Simon Rit [Mon, 30 May 2011 07:37:23 +0000 (09:37 +0200)]
Accessor to list of filenames

13 years agoUnitialized variable was causing crash at startup on Windows
Simon Rit [Mon, 30 May 2011 07:35:59 +0000 (09:35 +0200)]
Unitialized variable was causing crash at startup on Windows

13 years agoUse OutputDebugString for DD on Windows
Simon Rit [Mon, 30 May 2011 07:35:27 +0000 (09:35 +0200)]
Use OutputDebugString for DD on Windows

13 years agoAdd clitkBool to perform boolean operation
dsarrut [Fri, 27 May 2011 15:35:42 +0000 (17:35 +0200)]
Add clitkBool to perform boolean operation

13 years agosolved bug 457
Romulo Pinho [Fri, 27 May 2011 13:23:45 +0000 (15:23 +0200)]
solved bug 457

- overall, just a matter of calling Render() after updating the contours
- another issue corrected: change of slice orientation didn't change contour orientation
- still existing issue: flickering and delay in contour update when navigating across slices (added to bug tracker)

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Fri, 27 May 2011 10:58:36 +0000 (12:58 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoComment unused executable
dsarrut [Fri, 27 May 2011 10:58:04 +0000 (12:58 +0200)]
Comment unused executable

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Fri, 27 May 2011 10:50:23 +0000 (12:50 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoRemove warning
dsarrut [Fri, 27 May 2011 10:03:24 +0000 (12:03 +0200)]
Remove warning

13 years agoComment MedianImageFilter
dsarrut [Fri, 27 May 2011 09:35:51 +0000 (11:35 +0200)]
Comment MedianImageFilter

13 years agocomment clitkExtractLymphStations
dsarrut [Fri, 27 May 2011 09:35:25 +0000 (11:35 +0200)]
comment clitkExtractLymphStations

13 years agoAdd AutoCrop
dsarrut [Fri, 27 May 2011 09:28:11 +0000 (11:28 +0200)]
Add AutoCrop

13 years agoRemove debug
dsarrut [Fri, 27 May 2011 09:24:22 +0000 (11:24 +0200)]
Remove debug

13 years agoRemove debug
dsarrut [Fri, 27 May 2011 09:23:55 +0000 (11:23 +0200)]
Remove debug

13 years agoCorrect extrusion (-spacing instead of spacing)
dsarrut [Fri, 27 May 2011 09:23:18 +0000 (11:23 +0200)]
Correct extrusion (-spacing instead of spacing)