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Creatis software - clitk.git/log
tbaudier [Tue, 10 Apr 2018 14:58:20 +0000 (16:58 +0200)]
Change from minimal version of ITK4.5 to ITK4.6
tbaudier [Tue, 10 Apr 2018 14:55:56 +0000 (16:55 +0200)]
change travis
tbaudier [Mon, 26 Mar 2018 09:50:26 +0000 (11:50 +0200)]
Set the Root Tree maximum size to 1TB instead of 1GB
tbaudier [Thu, 15 Mar 2018 13:13:52 +0000 (14:13 +0100)]
Add Dockerfile
tbaudier [Thu, 15 Mar 2018 10:12:09 +0000 (11:12 +0100)]
Be sure Number of Frame of Rotation exists in dicom tags
Simon Rit [Thu, 15 Mar 2018 09:14:26 +0000 (10:14 +0100)]
Windows compilation
Remove error due to M_PI
Remove error due to and
Remove warning due to unused variables
tbaudier [Thu, 15 Mar 2018 08:21:52 +0000 (09:21 +0100)]
Add windows maths include
tbaudier [Wed, 14 Mar 2018 13:18:10 +0000 (14:18 +0100)]
Add orientation in clitkImage2DicomDose
tbaudier [Tue, 13 Mar 2018 14:14:22 +0000 (15:14 +0100)]
Deal with Dose Grid Scaling Dicom tag in clitkImage2DicomDose
The tag is not support by ITK 4.13 (or less) contrary to ITK 4.5.1
tbaudier [Tue, 13 Mar 2018 10:24:05 +0000 (11:24 +0100)]
Be more precise for log in clitkImageArithm
tbaudier [Fri, 9 Mar 2018 15:36:18 +0000 (16:36 +0100)]
#61 Remove undesired variable declaration in vvBinaryImageOverlayActor
tbaudier [Fri, 9 Mar 2018 14:56:27 +0000 (15:56 +0100)]
Merge pull request #61 from djboersma/fixROIsegfault
avoid segfault when adding ROI to image w/o trafo
tbaudier [Fri, 9 Mar 2018 14:39:39 +0000 (15:39 +0100)]
Update explanation about clitkExtractPatient
David Boersma [Fri, 9 Mar 2018 14:11:26 +0000 (15:11 +0100)]
avoid segfault when adding ROI to image w/o trafo
we got segfaults with VV when doing the following
1. start VV
2. select CT image set (DICOM)
3. open ROI from DICOM
The segfault happened right after we had selected the names of the ROIs to be selected from the RS.* file.
After compiling VV as a "Debug" build and running the above steps in gdb, the
backtrace showed that the crash was caused in line 125 of
vvBinaryImageOverlayActor.cxx. Apparently our CT image was represented without
any transformation at that point in the code, while the code assumed that there
would always be a transformation.
If it is DICOM-wise or VTK-wise legal for an image to have an empty vector of
transformations, then I think that my fix is sufficient.
If you think that it is anomalous that this vector was empty in our case, then
I think more work is needed. For instance, if this situation could really only
happen if the input data is somehow corrupt, then the user should get an
informative error message about that, and maybe VV just terminates after that
in a more controlled way. Or maybe VV should just provide identity trafo to
images that have an empty trafo vector. Or, less likely, maybe the image did
have a trafo but VV somehow manages to lose it? In all these cases this PR is
insufficient. I can't tell myself, because I am not an image expert. :-)
tbaudier [Fri, 9 Mar 2018 12:07:20 +0000 (13:07 +0100)]
Quality SonarCloud things
tbaudier [Fri, 9 Mar 2018 10:54:33 +0000 (11:54 +0100)]
close #59 #58 Change clitkAffineTransform --transform_grid
Take into account the output bounding box correctly
Correct spacing to avoid null spacing
tbaudier [Fri, 9 Mar 2018 10:50:34 +0000 (11:50 +0100)]
Remove useless variable
tbaudier [Fri, 9 Mar 2018 10:49:15 +0000 (11:49 +0100)]
Add saveAs function to save a text file in clitkHistogramImage
tbaudier [Mon, 5 Mar 2018 10:39:26 +0000 (11:39 +0100)]
close #57 The origin is modify in autoCrop, do not modify it again in cropFilter
tbaudier [Wed, 14 Feb 2018 12:50:14 +0000 (13:50 +0100)]
Update Readme.md to add SonarCloud pins
tbaudier [Wed, 14 Feb 2018 11:51:48 +0000 (12:51 +0100)]
Add SonarCloud files
tbaudier [Wed, 14 Feb 2018 10:56:51 +0000 (11:56 +0100)]
Update SonarCloud properties
tbaudier [Wed, 14 Feb 2018 08:09:00 +0000 (09:09 +0100)]
Add sonarCloud
tbaudier [Tue, 13 Feb 2018 15:58:56 +0000 (16:58 +0100)]
Add sonarCloud
tbaudier [Tue, 13 Feb 2018 08:43:27 +0000 (09:43 +0100)]
Add ITK v4.13.0
tbaudier [Mon, 12 Feb 2018 15:05:20 +0000 (16:05 +0100)]
Add correct travis cache
tbaudier [Fri, 9 Feb 2018 15:18:59 +0000 (16:18 +0100)]
Update Travis file to manage cache failure
Add sonarcloud project
tbaudier [Thu, 8 Feb 2018 14:49:57 +0000 (15:49 +0100)]
Add -e output for qsub in gate_run_submit_cluster
tbaudier [Thu, 1 Feb 2018 15:32:09 +0000 (16:32 +0100)]
close #56 Remove ITK_Review dependency
Change in clitkBLUTDIRGenericFilter from itk::LabelGeometryImageFilter to itk::LabelStatisticsImageFilter
tbaudier [Tue, 30 Jan 2018 14:28:30 +0000 (15:28 +0100)]
Add new dicom tag in clitkImage2DicomDose
tbaudier [Mon, 29 Jan 2018 13:56:52 +0000 (14:56 +0100)]
Add correct scaling filter for clitkImage2DicomDoseGenericFilter
Output to unsigned short int for ITK
tbaudier [Fri, 26 Jan 2018 08:24:46 +0000 (09:24 +0100)]
Be sure to have the correct origin in clitkImage2DicomDose output
tbaudier [Thu, 25 Jan 2018 14:00:57 +0000 (15:00 +0100)]
Use ITK-gdcm with clitkImage2DicomDoseGenericFilter
tbaudier [Thu, 25 Jan 2018 12:03:53 +0000 (13:03 +0100)]
Debug verbosity in clitkImage2DicomDose
tbaudier [Thu, 25 Jan 2018 08:57:19 +0000 (09:57 +0100)]
Describe clitkUnsharpMask
tbaudier [Tue, 23 Jan 2018 14:56:59 +0000 (15:56 +0100)]
Add localization of max and min in clitkImageStatistics
tbaudier [Mon, 15 Jan 2018 10:36:32 +0000 (11:36 +0100)]
Exception when tag is not found
tbaudier [Fri, 12 Jan 2018 15:35:00 +0000 (16:35 +0100)]
Precision on clitkBlurImage help
tbaudier [Thu, 11 Jan 2018 08:58:01 +0000 (09:58 +0100)]
Debug default value when dividing by 0 in clitkImageArithm
Simon Rit [Tue, 2 Jan 2018 15:13:18 +0000 (16:13 +0100)]
COMP: fix test logic for ITK version which failed with the new ITK v5
Simon Rit [Tue, 2 Jan 2018 15:11:52 +0000 (16:11 +0100)]
COMP: renamed min max macros which are no longer allowed
Problem showed up on mac os:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__undef_min_max:29:2:
warning: : macro max is incompatible with C++. #undefing max
tbaudier [Tue, 5 Dec 2017 13:21:09 +0000 (14:21 +0100)]
Initialize mConcatenatedFusionTransform
tbaudier [Fri, 24 Nov 2017 15:27:25 +0000 (16:27 +0100)]
Update README
tbaudier [Fri, 17 Nov 2017 15:31:22 +0000 (16:31 +0100)]
Update README with installation instructions
tbaudier [Fri, 17 Nov 2017 15:28:02 +0000 (16:28 +0100)]
Update README with installation instructions
tbaudier [Fri, 17 Nov 2017 11:39:54 +0000 (12:39 +0100)]
Update clitk for travis
tbaudier [Fri, 17 Nov 2017 08:26:39 +0000 (09:26 +0100)]
Update itk for travis
tbaudier [Thu, 16 Nov 2017 16:03:21 +0000 (17:03 +0100)]
Update travis file for VTK
tbaudier [Thu, 16 Nov 2017 16:02:20 +0000 (17:02 +0100)]
clitkDicom2Image with imaging machine coordinate system (Identity matrix) by default
Add an option to have it with patient coordinate system
tbaudier [Thu, 16 Nov 2017 14:49:32 +0000 (15:49 +0100)]
Open Dicom with imaging machine coordinate system (Identity matrix) by default
Add a check box to open it with patient coordinate system
tbaudier [Thu, 9 Nov 2017 13:33:05 +0000 (14:33 +0100)]
Clear previous commits for clitkDicom2Image
tbaudier [Thu, 9 Nov 2017 13:22:47 +0000 (14:22 +0100)]
Debug clitkDicom2Image with focal_origin option
Simon Rit [Wed, 8 Nov 2017 12:35:58 +0000 (13:35 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 8 Nov 2017 12:35:08 +0000 (13:35 +0100)]
Fix init for clitk image formats
tbaudier [Wed, 25 Oct 2017 09:15:39 +0000 (11:15 +0200)]
Debug #54
tbaudier [Fri, 6 Oct 2017 11:56:01 +0000 (13:56 +0200)]
Add include
tbaudier [Fri, 6 Oct 2017 10:36:08 +0000 (12:36 +0200)]
Remove warning with VTK8.1
tbaudier [Fri, 6 Oct 2017 08:40:16 +0000 (10:40 +0200)]
Update to OpenGL2
tbaudier [Wed, 4 Oct 2017 12:41:40 +0000 (14:41 +0200)]
Update SplitFilename function
tbaudier [Wed, 4 Oct 2017 11:51:15 +0000 (13:51 +0200)]
Debug #54
tbaudier [Wed, 4 Oct 2017 09:20:35 +0000 (11:20 +0200)]
Add ;
tbaudier [Wed, 4 Oct 2017 08:07:33 +0000 (10:07 +0200)]
Try to debug RTStruct with rotation matrix
Work for clitkDicomRTStruct2ImageFilter not for vv
tbaudier [Tue, 26 Sep 2017 09:58:45 +0000 (11:58 +0200)]
Reslice axis for overlay, fusion and vf
tbaudier [Tue, 26 Sep 2017 09:26:02 +0000 (11:26 +0200)]
Reslice with correct spacing
tbaudier [Tue, 26 Sep 2017 07:56:28 +0000 (09:56 +0200)]
Add table of content to doc on wiki
tbaudier [Mon, 25 Sep 2017 15:15:03 +0000 (17:15 +0200)]
Add doc tool for th wiki
tbaudier [Mon, 25 Sep 2017 14:46:41 +0000 (16:46 +0200)]
Add information for clitkBlur
tbaudier [Thu, 14 Sep 2017 14:29:04 +0000 (16:29 +0200)]
Change permission right access when installing for registration and segmentation tools
tbaudier [Thu, 14 Sep 2017 14:23:41 +0000 (16:23 +0200)]
Change permission right access when installing for cluster tools and vv
tbaudier [Thu, 14 Sep 2017 14:23:16 +0000 (16:23 +0200)]
Change permission right access
tbaudier [Thu, 24 Aug 2017 09:08:26 +0000 (11:08 +0200)]
Add adaptive tag to clitkAffineTransform for the transition with clitkResampleImage
tbaudier [Tue, 22 Aug 2017 13:37:56 +0000 (15:37 +0200)]
Remove warnings with VTK8
tbaudier [Wed, 9 Aug 2017 13:14:14 +0000 (15:14 +0200)]
Remove clitkResampleImage
tbaudier [Wed, 9 Aug 2017 11:51:42 +0000 (13:51 +0200)]
Add gaussian filtering options into clitkAffineTransform
tbaudier [Wed, 9 Aug 2017 09:35:26 +0000 (11:35 +0200)]
Add Direction options in clitkAffineTransform
tbaudier [Tue, 8 Aug 2017 13:07:37 +0000 (15:07 +0200)]
Add clitkUpdateVRTagDicom tool
tbaudier [Fri, 4 Aug 2017 15:43:10 +0000 (17:43 +0200)]
update travis file with vv
tbaudier [Fri, 4 Aug 2017 11:52:48 +0000 (13:52 +0200)]
update travis file with itk
tbaudier [Fri, 4 Aug 2017 07:14:16 +0000 (09:14 +0200)]
Update cache with travis
tbaudier [Thu, 3 Aug 2017 12:40:40 +0000 (14:40 +0200)]
Update Travis file with itk
tbaudier [Thu, 3 Aug 2017 12:40:04 +0000 (14:40 +0200)]
Integrate MaskOfIntegratedIntensity into clitkBinarizeImage
tbaudier [Thu, 3 Aug 2017 11:44:34 +0000 (13:44 +0200)]
Try to debug Qt installation on travis
tbaudier [Thu, 3 Aug 2017 09:50:21 +0000 (11:50 +0200)]
Write the correct output tag in clitkPartitionEnergyWindowDicomGenericFilter
tbaudier [Thu, 3 Aug 2017 07:53:47 +0000 (09:53 +0200)]
Travis cache debug (vtk)
tbaudier [Thu, 3 Aug 2017 07:39:08 +0000 (09:39 +0200)]
Travis cache debug (vtk)
tbaudier [Thu, 3 Aug 2017 07:31:34 +0000 (09:31 +0200)]
Travis cache debug (vtk)
tbaudier [Thu, 3 Aug 2017 07:15:13 +0000 (09:15 +0200)]
Travis cache debug (vtk)
tbaudier [Tue, 1 Aug 2017 14:52:26 +0000 (16:52 +0200)]
Add clitkPartitionEnergyWindowDicom tool
tbaudier [Tue, 1 Aug 2017 13:34:41 +0000 (15:34 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
tbaudier [Tue, 1 Aug 2017 13:34:10 +0000 (15:34 +0200)]
Add option to variance with only one number
David Sarrut [Wed, 26 Jul 2017 06:56:51 +0000 (08:56 +0200)]
adapt power merge for osx
David Sarrut [Wed, 26 Jul 2017 06:13:15 +0000 (08:13 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 26 Jul 2017 06:12:50 +0000 (08:12 +0200)]
adapt to osx
tbaudier [Mon, 24 Jul 2017 12:28:34 +0000 (14:28 +0200)]
Image Orientation with Dicom debug
tbaudier [Fri, 23 Jun 2017 08:39:29 +0000 (10:39 +0200)]
Debug hdr condition in gate_power_merge.sh
tbaudier [Wed, 14 Jun 2017 14:40:03 +0000 (16:40 +0200)]
Debug RTStruct offset in z direction with vtk6 (next part)
tbaudier [Mon, 12 Jun 2017 13:04:35 +0000 (15:04 +0200)]
Separate term to term multiplication and dotproduct with VectorArithm
tbaudier [Fri, 9 Jun 2017 14:57:50 +0000 (16:57 +0200)]
Remove warning with VTK7.1
tbaudier [Fri, 9 Jun 2017 14:55:19 +0000 (16:55 +0200)]
english mistake
tbaudier [Wed, 7 Jun 2017 14:51:41 +0000 (16:51 +0200)]
Correct sorting order in MaskOfIntegratedIntensity tool