]>
Creatis software - clitk.git/log
David Sarrut [Wed, 16 Jul 2014 16:06:23 +0000 (18:06 +0200)]
Correct DDS
David Sarrut [Tue, 15 Jul 2014 06:04:09 +0000 (08:04 +0200)]
Protect the FATAL macro
David Sarrut [Fri, 13 Jun 2014 12:24:31 +0000 (14:24 +0200)]
Correct display of label number even if image of char
David Sarrut [Fri, 13 Jun 2014 11:42:59 +0000 (13:42 +0200)]
Small change in error message.
David Sarrut [Tue, 10 Jun 2014 13:59:21 +0000 (15:59 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Hans Johnson [Thu, 5 Jun 2014 15:59:00 +0000 (10:59 -0500)]
STYLE: Move CMake commands to match new conventions
The next step in removing end-of-lines is to run through all the
CMakeLists.txt files and clean them up.
This also changes all the key words to lower
case. The primary reason for changing key words is that all documentation for
CMakeLists.txt now shows the key words as lower case. Even the printed
“Mastering CMake v5” uses lower case. I’ve come across this several
times in my class where students stumble over the fact that the
documentation about Cmake does not match the implementation in ITK.
I have a script (a wrapper around a vim macro) written that can make
these substituions reliably (Tested on the BRAINS tree, the Slicer3
tree, and the ITK tree without causing any errors). more complete
documentaiton can be found attached to
Hans Johnson [Thu, 5 Jun 2014 14:43:10 +0000 (09:43 -0500)]
COMP: First Mac 10.9 build fixes.
This patch probably includes a few items that are
not strictly necessary, but during the fumbling
around to find a working solution, these
were the identified failures.
Updating VTK and ITK were key components to
make this process work.
Hans Johnson [Sat, 31 May 2014 14:01:12 +0000 (09:01 -0500)]
COMP: Update ITK and VTK
ITK and VTK updates allow building with c++11 on
mavericks with the latest apple clang compiler.
Hans Johnson [Sat, 31 May 2014 12:59:26 +0000 (07:59 -0500)]
COMP: C++11 identified type missmatches
rtkHisImageIO.cxx:149:53: error: constant
expression evaluates to 134 which cannot be narrowed to type 'char'
[-Wc++11-narrowing]
Benoît Presles [Mon, 2 Jun 2014 14:44:21 +0000 (16:44 +0200)]
Agata - why did you delete these tools ?
Agata Krason [Tue, 27 May 2014 17:27:30 +0000 (19:27 +0200)]
First version of new tool clitkDVH - possibility to compute dose volume histogram %/cc/voxels.
David Sarrut [Tue, 27 May 2014 06:00:01 +0000 (08:00 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Brent Huisman [Tue, 6 May 2014 16:00:18 +0000 (18:00 +0200)]
Fix clitkMergeRootFiles, proper but nonobvious init for TFileMerger was missing.
David Sarrut [Mon, 5 May 2014 06:22:22 +0000 (08:22 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Fri, 2 May 2014 10:49:49 +0000 (12:49 +0200)]
for compatibility reasons I deleted the case insensitive search in OSX
David Sarrut [Thu, 17 Apr 2014 12:30:05 +0000 (14:30 +0200)]
Allow to correct for dicom with negative spacing (dcm to mhd)
David Sarrut [Thu, 20 Mar 2014 11:18:48 +0000 (12:18 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 12 Mar 2014 07:11:01 +0000 (08:11 +0100)]
Do not remove afs files and job log files at the end of the submission,
only the other files
Simon Rit [Fri, 7 Mar 2014 10:25:07 +0000 (11:25 +0100)]
Fix merge with the copy of mac folder and copy the mac folder in the
results directory
Simon Rit [Fri, 7 Mar 2014 08:57:32 +0000 (09:57 +0100)]
Enabled cluster script for CC IN2P3 (based on Pierre's dev)
Simon Rit [Thu, 6 Mar 2014 15:56:45 +0000 (16:56 +0100)]
Fixed displayed slice number. Now 0-based and accurate...
Simon Rit [Thu, 6 Mar 2014 06:50:39 +0000 (07:50 +0100)]
Enable clitk IO
Simon Rit [Thu, 27 Feb 2014 08:48:51 +0000 (09:48 +0100)]
Fix for one slice only
David Sarrut [Mon, 24 Feb 2014 12:06:33 +0000 (13:06 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Dominik Spinczyk [Wed, 19 Feb 2014 12:45:07 +0000 (13:45 +0100)]
clitkPointRigidRegistration comment unnecessary header file
David Sarrut [Mon, 17 Feb 2014 14:48:08 +0000 (15:48 +0100)]
Replace "itk::NumericTraits<PixelType>::Zero" with explicit initialisation (for macos)
Dominik Spinczyk [Mon, 17 Feb 2014 09:48:18 +0000 (10:48 +0100)]
Now calculate FRE
Dominik Spinczyk [Tue, 4 Feb 2014 12:07:28 +0000 (13:07 +0100)]
Moved back accidentally deleted tools
Dominik Spincwyk [Mon, 3 Feb 2014 15:24:05 +0000 (16:24 +0100)]
Removing polish comments
Dominik Spincwyk [Mon, 3 Feb 2014 14:44:27 +0000 (15:44 +0100)]
First version of PointRigidRegistration
David Sarrut [Tue, 28 Jan 2014 15:20:09 +0000 (16:20 +0100)]
Add explicit origin when resample
David Sarrut [Tue, 28 Jan 2014 15:19:34 +0000 (16:19 +0100)]
Take input/output spacing for origin
David Sarrut [Mon, 27 Jan 2014 14:21:52 +0000 (15:21 +0100)]
Do not remove G4 data files
David Sarrut [Mon, 20 Jan 2014 15:50:37 +0000 (16:50 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Fri, 17 Jan 2014 18:16:49 +0000 (19:16 +0100)]
new tool = gaussian blur filtering + improved gradient magnitude tool + added help to clitkImageLaplacian
Benoît Presles [Fri, 17 Jan 2014 18:04:09 +0000 (19:04 +0100)]
Back to the correct version... I think I am right...
David Sarrut [Tue, 14 Jan 2014 07:11:30 +0000 (08:11 +0100)]
Trailing spaces
David Sarrut [Tue, 14 Jan 2014 07:10:44 +0000 (08:10 +0100)]
Add dcm extension
David Sarrut [Tue, 14 Jan 2014 07:09:55 +0000 (08:09 +0100)]
Add display matrix option
David Sarrut [Tue, 14 Jan 2014 06:54:55 +0000 (07:54 +0100)]
Remove warning sprintf
David Sarrut [Tue, 14 Jan 2014 06:54:33 +0000 (07:54 +0100)]
Copy macro files for log
David Sarrut [Tue, 14 Jan 2014 06:54:09 +0000 (07:54 +0100)]
Now work for single thread simulation
David Sarrut [Fri, 10 Jan 2014 10:15:18 +0000 (11:15 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 10 Jan 2014 10:14:50 +0000 (11:14 +0100)]
Back to the correct version... Benoit you will be hanged !
Benoît Presles [Thu, 9 Jan 2014 13:43:47 +0000 (14:43 +0100)]
new tool to normalize an image
Simon Rit [Sat, 4 Jan 2014 15:23:43 +0000 (16:23 +0100)]
Detect ITK_USE_SYSTEM_GDCM with target
Simon Rit [Fri, 3 Jan 2014 18:27:28 +0000 (19:27 +0100)]
Remove setmode definition since it was not used and it prevents
compilation on MacOS
Simon Rit [Wed, 18 Dec 2013 15:25:28 +0000 (16:25 +0100)]
Fixed issues with --like option
Simon Rit [Tue, 10 Dec 2013 12:20:48 +0000 (13:20 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 10 Dec 2013 12:14:15 +0000 (13:14 +0100)]
Updated help of vv command line
Simon Rit [Mon, 9 Dec 2013 20:55:01 +0000 (21:55 +0100)]
Robust detection of GDCM compilation by ITK: made it robust to ITK installation
Benoît Presles [Wed, 27 Nov 2013 09:54:56 +0000 (10:54 +0100)]
inverted IO reader order to solve a bug with vox files
Benoît Presles [Thu, 21 Nov 2013 12:44:39 +0000 (13:44 +0100)]
deleted an extra space in order to be able to grep the results of clitkImageInfo
Benoît Presles [Tue, 12 Nov 2013 09:30:52 +0000 (10:30 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 12 Nov 2013 09:29:58 +0000 (10:29 +0100)]
new tool to normalize image intensity
Simon Rit [Fri, 8 Nov 2013 11:21:48 +0000 (12:21 +0100)]
When clicking on the all button, also propagate fusion and overlay W/L
Simon Rit [Fri, 8 Nov 2013 11:09:55 +0000 (12:09 +0100)]
Added missing init for IO factories
Simon Rit [Thu, 31 Oct 2013 15:47:25 +0000 (16:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 31 Oct 2013 15:47:14 +0000 (16:47 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 31 Oct 2013 15:46:55 +0000 (16:46 +0100)]
Tool to multiply 4x4 matrices
Simon Rit [Thu, 31 Oct 2013 15:45:21 +0000 (16:45 +0100)]
Option to save VV transform (mhd + .mat) in the new mhd
Simon Rit [Thu, 31 Oct 2013 14:43:11 +0000 (15:43 +0100)]
Merge several run results in one
Simon Rit [Thu, 31 Oct 2013 14:37:12 +0000 (15:37 +0100)]
Allow symbolic links
Benoît Presles [Tue, 29 Oct 2013 18:00:31 +0000 (19:00 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 29 Oct 2013 17:56:40 +0000 (18:56 +0100)]
added the possibility to compute the Laplacian of Gaussian (LoG) of an image
Vivien Delmon [Mon, 28 Oct 2013 12:24:45 +0000 (13:24 +0100)]
Remove itkSetMacro
In debug this Macro need the operator << (std::cout) which is not
defined for std::vector. Could be an idea to add a
clitkSetMacroWithoutDebug.
There is a discussion about this on the ITK developper ML :
http://www.itk.org/pipermail/insight-developers/2011-April/018174.html
But with no conclusion ...
Vivien Delmon [Mon, 28 Oct 2013 12:23:45 +0000 (13:23 +0100)]
Remove useless include and trailing whitespaces
Vivien Delmon [Fri, 25 Oct 2013 13:44:38 +0000 (15:44 +0200)]
Do not compile clitkDice with ITK < 4
clitkDice needs an itkLabelOverlapMeasuresImageFilter.h that was present
in clitk but has been removed (by David Sarrut !!) in
f4854864b1e9dacf51ffee720eeb4c72edb59e4f
The class is now part of ITK > 4.
Benoît Presles [Fri, 18 Oct 2013 13:12:34 +0000 (15:12 +0200)]
new tool to compute the laplacian of an image
Benoît Presles [Thu, 17 Oct 2013 16:18:23 +0000 (18:18 +0200)]
deleted an extra quote
Benoît Presles [Thu, 17 Oct 2013 16:11:18 +0000 (18:11 +0200)]
added an optional mask + the possibility to get a normalized output image
Benoît Presles [Wed, 16 Oct 2013 14:05:51 +0000 (16:05 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Wed, 16 Oct 2013 14:04:59 +0000 (16:04 +0200)]
gradient magnitude tool
Vivien Delmon [Wed, 9 Oct 2013 09:16:07 +0000 (11:16 +0200)]
Refactor cluster_tools CMakeLists
- Remove add_subdiretory in tools/CMakeLists.txt
- Add add_subdiretory in CMakeLists.txt
- Add test to install cluster_tools if CLITK_BUILD_TOOLS is ON
Simon Rit [Thu, 3 Oct 2013 10:49:47 +0000 (12:49 +0200)]
Simon Rit [Mon, 30 Sep 2013 14:14:29 +0000 (16:14 +0200)]
Add mha in uncertainty files and error message if unhandled file format
Simon Rit [Mon, 30 Sep 2013 14:09:44 +0000 (16:09 +0200)]
Allow for uncertainties which name does not start with output
Simon Rit [Mon, 23 Sep 2013 14:26:00 +0000 (16:26 +0200)]
Remove warning with .mha files
Simon Rit [Mon, 23 Sep 2013 14:21:04 +0000 (16:21 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Fri, 13 Sep 2013 19:36:01 +0000 (21:36 +0200)]
Improved Elastix conversion
Benoît Presles [Fri, 6 Sep 2013 08:03:08 +0000 (10:03 +0200)]
revert the local CLITK_USE_SYSTEM_GDCM path - not wanted to commit it
Benoît Presles [Thu, 5 Sep 2013 17:07:55 +0000 (19:07 +0200)]
Median Filter + some bug corrections in Resample Image Filter
Simon Rit [Wed, 4 Sep 2013 12:31:41 +0000 (14:31 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 21 Aug 2013 09:54:40 +0000 (11:54 +0200)]
Use IsNormal instead of std::isnormal (C++11)
std::isnormal is a C++11 function not available in VS 2012
use IsNormal defined in clitkPortability instead
Vivien Delmon [Wed, 21 Aug 2013 09:32:52 +0000 (11:32 +0200)]
Revert "Remove C++11 call to isnormal"
This reverts commit
a845c6a04ecfeedc8eced5f4051e06ee88c59e90 .
Vivien Delmon [Wed, 21 Aug 2013 09:18:27 +0000 (11:18 +0200)]
Remove C++11 call to isnormal
- std::isnormal is not available under windows VS12. Implement it using
numeric_limits functions
agata [Wed, 14 Aug 2013 19:11:15 +0000 (21:11 +0200)]
Remove build clitk options in superbuild, add gdcm 2.2.4.
David Sarrut [Mon, 29 Jul 2013 06:07:03 +0000 (08:07 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 29 Jul 2013 06:05:47 +0000 (08:05 +0200)]
Remove warning on mac (vtk)
Agata Krason [Fri, 26 Jul 2013 15:35:46 +0000 (17:35 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Agata Krason [Fri, 26 Jul 2013 15:33:06 +0000 (17:33 +0200)]
Superbuild : Change version gdcm - 2.2.4, itk 4.4.0 and add make install to VV.
David Sarrut [Fri, 26 Jul 2013 13:39:53 +0000 (15:39 +0200)]
Add cluster_tool scripts in install
David Sarrut [Fri, 26 Jul 2013 13:12:27 +0000 (15:12 +0200)]
First version of gate_make_merge_release (for gatelab)
David Sarrut [Fri, 26 Jul 2013 13:05:15 +0000 (15:05 +0200)]
Add clitkImageUncertainty (for gate dose uncertainty)
David Sarrut [Fri, 26 Jul 2013 13:01:41 +0000 (15:01 +0200)]
Moved from repository clitk.private to tools
gueth [Thu, 3 Mar 2011 15:03:30 +0000 (15:03 +0000)]
uncertainty=100% when no dose in voxel (as in Gate)
schaerer [Thu, 28 Oct 2010 12:42:11 +0000 (12:42 +0000)]
compatibility with the newest gengetopt
dsarrut [Tue, 9 Mar 2010 15:45:11 +0000 (15:45 +0000)]
- make compatible with new signal folder - add common.cmake (to generate ggo files)
schaerer [Tue, 19 Jan 2010 16:02:52 +0000 (16:02 +0000)]
tests_dav
David Sarrut [Fri, 26 Jul 2013 12:57:35 +0000 (14:57 +0200)]
Add computation of statistical uncertainty