]> Creatis software - clitk.git/log
clitk.git
11 years agoAdd findAndReplace
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add findAndReplace

11 years agoFixes for bug #1883
Simon Rit [Thu, 31 Jan 2013 08:29:14 +0000 (09:29 +0100)]
Fixes for bug #1883

11 years agoFix for bug 1882
Simon Rit [Wed, 30 Jan 2013 10:08:59 +0000 (11:08 +0100)]
Fix for bug 1882

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Tue, 29 Jan 2013 07:55:18 +0000 (08:55 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agocorrect bugs related to new window/level option
Romulo Pinho [Fri, 25 Jan 2013 13:51:47 +0000 (14:51 +0100)]
correct bugs related to new window/level option

- also refactored to avoid similar problems in the future

11 years agoadded tool to interpolate VFs
Romulo Pinho [Thu, 24 Jan 2013 13:26:49 +0000 (14:26 +0100)]
added tool to interpolate VFs

- support for float/double;Dim=3;Comp=3; vectors only

11 years agoadded window/level preset for head/brain
Romulo Pinho [Thu, 24 Jan 2013 13:25:06 +0000 (14:25 +0100)]
added window/level preset for head/brain

- same as Focal

11 years agoAdd nb of pixels in A and not in B (and reverse)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add nb of pixels in A and not in B (and reverse)

11 years agoIn CropImageAlong, correct small bug
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
In CropImageAlong, correct small bug

11 years agoAdd verbose options
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add verbose options

11 years agoAdd verbose optinos
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add verbose optinos

11 years agoCrop label image like input before stat
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Crop label image like input before stat

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Tue, 22 Jan 2013 09:08:26 +0000 (10:08 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Tue, 22 Jan 2013 08:27:24 +0000 (09:27 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 21 Jan 2013 07:49:52 +0000 (08:49 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 17 Jan 2013 08:19:36 +0000 (09:19 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

11 years agocircumventing apparent bug in BSplineTransform of ITK 4.x
Romulo Pinho [Thu, 17 Jan 2013 08:15:48 +0000 (09:15 +0100)]
circumventing apparent bug in BSplineTransform of ITK 4.x

- SetCoefficientImages doesn't seem to take all images of fields of the flat vector image
- Created the flat parameters-image myself and used SetParameters() instead

11 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
rblanc [Tue, 15 Jan 2013 14:03:10 +0000 (15:03 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

Conflicts:
vv/vvMainWindow.cxx
vv/vvMainWindow.h

11 years agoimproved behavior when closing an image related to a fusion sequence (not fully finished)
rblanc [Tue, 15 Jan 2013 13:52:07 +0000 (14:52 +0100)]
improved behavior when closing an image related to a fusion sequence (not fully finished)

11 years agoFix for bug #1881
Simon Rit [Tue, 15 Jan 2013 13:35:30 +0000 (14:35 +0100)]
Fix for bug #1881

11 years agoAdd K1 accessors
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add K1 accessors

11 years agoitk4.3 compatibility
Vivien Delmon [Mon, 14 Jan 2013 17:16:48 +0000 (18:16 +0100)]
itk4.3 compatibility

- Use Update instead of StartRegistration

11 years agoitk4.3 compatibility
Vivien Delmon [Mon, 14 Jan 2013 15:50:02 +0000 (16:50 +0100)]
itk4.3 compatibility

- itkCompose3DVectorImageFilter is now itkComposeImageFilter

11 years agoRemove itkAnalyzeImageIO
Vivien Delmon [Mon, 14 Jan 2013 15:27:24 +0000 (16:27 +0100)]
Remove itkAnalyzeImageIO

- itkAnalyzeImageIO was used to force identity matrix when reading
analyze images. itk now uses another reader that does not apply fancy
matrix when reading analyze file, previous code is not needed anymore.

11 years agoCompatibility
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Compatibility

11 years agoAdd border flag to auto crop
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add border flag to auto crop

11 years agoDisplay k1 and set k1 to relPosFilter
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Display k1 and set k1 to relPosFilter

11 years agoAdd ushort pixel type
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add ushort pixel type

11 years agoAdd line break after display
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add line break after display

11 years agoAdd warning
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add warning

11 years agoAdd short type
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add short type

11 years agoImprove code clarity (hopefully)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Improve code clarity (hopefully)

11 years agoAdd another operation -ln(I/IO)
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add another operation -ln(I/IO)

11 years agoRemove comments
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Remove comments

11 years agofixed the TSliders issues for FusionSequence, and prepared ground for temporal synchr...
rblanc [Tue, 8 Jan 2013 17:57:23 +0000 (18:57 +0100)]
fixed the TSliders issues for FusionSequence, and prepared ground for temporal synchronization, which still needs to be implemented...

11 years agocontinued the fusion sequence visualization mode
rblanc [Mon, 7 Jan 2013 16:26:07 +0000 (17:26 +0100)]
continued the fusion sequence visualization mode

trying to improve display and window behavior
and preparing ground for temporal synchronization
seems broken however... as loading an image causes a crash...

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Benoît Presles [Thu, 20 Dec 2012 17:30:01 +0000 (18:30 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 17 Dec 2012 08:26:06 +0000 (09:26 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoAdded GoToLandmark functionality
Romulo Pinho [Thu, 13 Dec 2012 16:16:02 +0000 (17:16 +0100)]
Added GoToLandmark functionality

- like GoToCursor, but when we double-click a landmark in the landmark panel's table

12 years agoadd "Remove All" landmarks
Romulo Pinho [Thu, 13 Dec 2012 15:31:43 +0000 (16:31 +0100)]
add "Remove All" landmarks

12 years ago(more) robust handling of landmarks in time-sequences
Romulo Pinho [Thu, 13 Dec 2012 15:11:43 +0000 (16:11 +0100)]
(more) robust handling of landmarks in time-sequences

- --landmarks [--sequence] cmd line option (including help message!)
- landmark display follows time-frame
- landmark addition/removal also matches time-frame

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Wed, 12 Dec 2012 07:13:32 +0000 (08:13 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoadded --landmarks to vv's help message
Romulo Pinho [Thu, 6 Dec 2012 13:06:02 +0000 (14:06 +0100)]
added --landmarks to vv's help message

- we can generate a new release now...

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 6 Dec 2012 13:02:11 +0000 (14:02 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoadded new cmd line option: --landmarks
Romulo Pinho [Thu, 6 Dec 2012 13:01:31 +0000 (14:01 +0100)]
added new cmd line option: --landmarks

- guess what it does...

12 years agoadded support to new landmark-file type
Romulo Pinho [Thu, 6 Dec 2012 12:35:17 +0000 (13:35 +0100)]
added support to new landmark-file type

- .pts from Jef's studies

12 years agoimproved the FusionSequence visualization mode, by linking to the 2nd sequence (US).
rblanc [Wed, 5 Dec 2012 16:39:29 +0000 (17:39 +0100)]
improved the FusionSequence visualization mode, by linking to the 2nd sequence (US).

todo: the positions of horizontal sliders are not properly updated, but the display is OK.
Still the display bug for the fused US image...

12 years ago1/ some minor changes for compilation under windows / VC++ 2010 Express
rblanc [Tue, 4 Dec 2012 14:15:29 +0000 (15:15 +0100)]
1/ some minor changes for compilation under windows / VC++ 2010 Express

2/ 1st prototype version of the sequence fusion visualization mode (not so clean, but it works)

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Tue, 27 Nov 2012 15:21:04 +0000 (16:21 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agochanged PostMultiply to PreMultiply in vvImageReader
Benoît Presles [Mon, 26 Nov 2012 12:15:41 +0000 (13:15 +0100)]
changed PostMultiply to PreMultiply in vvImageReader

12 years agoSliceBySlice filter for uchar
David Sarrut [Mon, 26 Nov 2012 06:46:09 +0000 (07:46 +0100)]
SliceBySlice filter for uchar

12 years agoTry to precompile segmentation filter with uchar (faster compil)
David Sarrut [Mon, 26 Nov 2012 06:45:18 +0000 (07:45 +0100)]
Try to precompile segmentation filter with uchar (faster compil)

12 years agoRemove check on image information when loading merged image with time
Simon Rit [Fri, 23 Nov 2012 11:09:45 +0000 (12:09 +0100)]
Remove check on image information when loading merged image with time
from GUI to be consistent with command line. Since we are reslicing
anyway, there is no need to have similar info anymore.

12 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 21 Nov 2012 08:41:45 +0000 (09:41 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

12 years agoAdded ImagX file format from RTK
Simon Rit [Tue, 20 Nov 2012 16:30:21 +0000 (17:30 +0100)]
Added ImagX file format from RTK

12 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 19 Nov 2012 11:02:48 +0000 (12:02 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

12 years agoHandling SYSTEM GDCM build and install trees (correction)
Romulo Pinho [Thu, 15 Nov 2012 09:03:49 +0000 (10:03 +0100)]
Handling SYSTEM GDCM build and install trees (correction)

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Thu, 15 Nov 2012 08:50:48 +0000 (09:50 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoITK4 compatibility
Romulo Pinho [Thu, 15 Nov 2012 08:30:11 +0000 (09:30 +0100)]
ITK4 compatibility

12 years agohandling SYSTEM_GDCM from build and install trees
Romulo Pinho [Thu, 15 Nov 2012 08:29:27 +0000 (09:29 +0100)]
handling SYSTEM_GDCM from build and install trees

12 years agoAdded support for ESRF reconstructions
Simon Rit [Tue, 13 Nov 2012 17:42:59 +0000 (18:42 +0100)]
Added support for ESRF reconstructions

12 years agoCopied ESRF Edf processing from rtk and use rtk file names to emphasize that they...
Simon Rit [Tue, 13 Nov 2012 17:21:13 +0000 (18:21 +0100)]
Copied ESRF Edf processing from rtk and use rtk file names to emphasize that they are comming from rtk.

12 years agoCopied His processing from rtk and use rtk file names to emphasize that they are...
Simon Rit [Tue, 13 Nov 2012 16:30:43 +0000 (17:30 +0100)]
Copied His processing from rtk and use rtk file names to emphasize that they are comming from rtk.

12 years agoCopied Hnd processing from rtk and use rtk file names to emphasize that they are...
Simon Rit [Tue, 13 Nov 2012 16:27:35 +0000 (17:27 +0100)]
Copied Hnd processing from rtk and use rtk file names to emphasize that they are comming from rtk.

12 years agoadded support for more VF file types
Romulo Pinho [Fri, 9 Nov 2012 10:28:14 +0000 (11:28 +0100)]
added support for more VF file types

12 years agoRemoved git tag on VV to compile HEAD
Simon Rit [Fri, 9 Nov 2012 10:15:39 +0000 (11:15 +0100)]
Removed git tag on VV to compile HEAD

12 years agocompilation issues
Romulo Pinho [Thu, 8 Nov 2012 08:27:00 +0000 (09:27 +0100)]
compilation issues

- simplification of RPATH assignment when make-installing
- handling the use of ITK with USE_SYSTEM_GDCM

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Tue, 6 Nov 2012 09:32:24 +0000 (10:32 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoAdd option to detect too small segmented structures
David Sarrut [Tue, 6 Nov 2012 09:23:38 +0000 (10:23 +0100)]
Add option to detect too small segmented structures

12 years agoAdd option to detect too small segmented structures
David Sarrut [Tue, 6 Nov 2012 09:22:53 +0000 (10:22 +0100)]
Add option to detect too small segmented structures

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Mon, 5 Nov 2012 16:44:14 +0000 (17:44 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agocorrectly reading contour colours for GDCM 2.x
Romulo Pinho [Mon, 5 Nov 2012 16:42:12 +0000 (17:42 +0100)]
correctly reading contour colours for GDCM 2.x

12 years agoadjusting dependencies
Romulo Pinho [Mon, 5 Nov 2012 09:18:57 +0000 (10:18 +0100)]
adjusting dependencies

12 years agoSorry I push the wrong file
David Sarrut [Fri, 2 Nov 2012 19:35:17 +0000 (12:35 -0700)]
Sorry I push the wrong file

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Fri, 2 Nov 2012 19:25:11 +0000 (12:25 -0700)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

Conflicts:
vv/vvMainWindow.cxx

12 years agoAdd nii.gz as file extension
David Sarrut [Fri, 3 Feb 2012 06:57:12 +0000 (07:57 +0100)]
Add nii.gz as file extension

12 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Wed, 31 Oct 2012 10:11:10 +0000 (11:11 +0100)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

12 years agoAdded svl file format (Clarity)
Benoît Presles [Tue, 30 Oct 2012 10:57:16 +0000 (11:57 +0100)]
Added svl file format (Clarity)

12 years agoMerge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Benoît Presles [Tue, 30 Oct 2012 10:53:35 +0000 (11:53 +0100)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk

12 years agoFixed slice error: check that it is in extent before updating extents
Simon Rit [Tue, 30 Oct 2012 10:50:05 +0000 (11:50 +0100)]
Fixed slice error: check that it is in extent before updating extents

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 29 Oct 2012 15:45:31 +0000 (16:45 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agobug removal
Romulo Pinho [Thu, 25 Oct 2012 10:03:21 +0000 (12:03 +0200)]
bug removal

- correcting iterator regions

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
Romulo Pinho [Wed, 24 Oct 2012 20:50:13 +0000 (22:50 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agobug removal
Romulo Pinho [Wed, 24 Oct 2012 20:49:22 +0000 (22:49 +0200)]
bug removal

- was accessing pixel neighbours outside the image buffer...

12 years agoMerge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Benoît Presles [Wed, 24 Oct 2012 11:20:16 +0000 (13:20 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk

12 years agoupdated the render window for the labeled landmarks
Benoît Presles [Wed, 24 Oct 2012 11:18:32 +0000 (13:18 +0200)]
updated the render window for the labeled landmarks

12 years agoNo typename outside template (MSVC sensitive)
Simon Rit [Wed, 24 Oct 2012 07:08:23 +0000 (09:08 +0200)]
No typename outside template (MSVC sensitive)

12 years agoMerge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Benoît Presles [Tue, 23 Oct 2012 17:40:55 +0000 (19:40 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk

12 years agoMerge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Benoît Presles [Tue, 23 Oct 2012 17:02:58 +0000 (19:02 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk

12 years agoadded labels to landmarks
Benoît Presles [Tue, 23 Oct 2012 17:01:59 +0000 (19:01 +0200)]
added labels to landmarks

12 years agoClean-up while debugging
Simon Rit [Tue, 23 Oct 2012 16:56:26 +0000 (18:56 +0200)]
Clean-up while debugging

12 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Tue, 23 Oct 2012 12:28:14 +0000 (14:28 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

12 years agofurther changes to solve bug #1714
Romulo Pinho [Tue, 23 Oct 2012 09:51:00 +0000 (11:51 +0200)]
further changes to solve bug #1714

12 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 22 Oct 2012 14:27:36 +0000 (16:27 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

12 years agoBUG: Problem with absolute paths
Vivien Delmon [Mon, 22 Oct 2012 14:26:37 +0000 (16:26 +0200)]
BUG: Problem with absolute paths

12 years agoMerge branch 'master' of git.creatis.insa-lyon.fr:clitk
David Sarrut [Mon, 22 Oct 2012 13:29:26 +0000 (15:29 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

12 years agoFix for Bug #1714: only check on sliders of the visible vvSlicer.
Simon Rit [Mon, 22 Oct 2012 13:27:26 +0000 (15:27 +0200)]
Fix for Bug #1714: only check on sliders of the visible vvSlicer.

12 years agoMerge branch 'master' of tux.creatis.insa-lyon.fr:clitk
Vivien Delmon [Mon, 22 Oct 2012 10:54:39 +0000 (12:54 +0200)]
Merge branch 'master' of tux.creatis.insa-lyon.fr:clitk

12 years agoVV: added links to Read/Save state
Romulo Pinho [Fri, 19 Oct 2012 09:52:27 +0000 (11:52 +0200)]
VV: added links to Read/Save state

12 years agoChange comment for buggy part
David Sarrut [Fri, 19 Oct 2012 07:41:26 +0000 (09:41 +0200)]
Change comment for buggy part