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Creatis software - clitk.git/log
tbaudier [Thu, 31 Dec 2015 08:55:28 +0000 (09:55 +0100)]
Add Delete
tbaudier [Wed, 30 Dec 2015 14:00:48 +0000 (15:00 +0100)]
Add the profile display and the saving a text file
tbaudier [Wed, 23 Dec 2015 14:43:47 +0000 (15:43 +0100)]
Create the line iterator
tbaudier [Wed, 23 Dec 2015 09:58:53 +0000 (10:58 +0100)]
Selection of the 2 points
tbaudier [Tue, 22 Dec 2015 14:07:01 +0000 (15:07 +0100)]
Creation of the Profile Tool
tbaudier [Mon, 21 Dec 2015 15:11:47 +0000 (16:11 +0100)]
Debug slowness of scalar range computation
tbaudier [Tue, 15 Dec 2015 10:35:20 +0000 (11:35 +0100)]
Debug Cancel crop + rigid registration
tbaudier [Tue, 15 Dec 2015 10:33:07 +0000 (11:33 +0100)]
Merge branch 'VTK6_Qt5_Registration' into VTK6_Qt5
tbaudier [Mon, 14 Dec 2015 13:14:03 +0000 (14:14 +0100)]
Debug Rigid Registration
With & Without Overlay/Fusion/VF
David Sarrut [Mon, 14 Dec 2015 07:44:33 +0000 (08:44 +0100)]
cosmetic
David Sarrut [Mon, 14 Dec 2015 07:44:01 +0000 (08:44 +0100)]
add include
David Sarrut [Mon, 14 Dec 2015 07:31:47 +0000 (08:31 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
tbaudier [Fri, 11 Dec 2015 09:49:17 +0000 (10:49 +0100)]
Redo the Rigid Registration
Without the calculation of the transformation matrix
Works without overlay only, but the crop, ROI, ... still work
tbaudier [Wed, 9 Dec 2015 15:07:22 +0000 (16:07 +0100)]
Remove cout and add a restriction with Qt and VTK Versions
Pre-release version
tbaudier [Wed, 9 Dec 2015 11:08:16 +0000 (12:08 +0100)]
Debug segmentation fault when apply the Crop tool
tbaudier [Wed, 9 Dec 2015 10:57:16 +0000 (11:57 +0100)]
Debug try with ImageReslice update and autoCrop
tbaudier [Tue, 8 Dec 2015 09:07:05 +0000 (10:07 +0100)]
Merge branch 'master' into VTK6_Qt5
tbaudier [Mon, 7 Dec 2015 14:48:23 +0000 (15:48 +0100)]
Debug segmentation fault when cancelling
tbaudier [Mon, 7 Dec 2015 12:40:39 +0000 (13:40 +0100)]
Debug VF/Landmarks + Crop
tbaudier [Mon, 7 Dec 2015 12:30:35 +0000 (13:30 +0100)]
Merge branch 'VTK6_Qt5_VF' into VTK6_Qt5_Crop
tbaudier [Mon, 7 Dec 2015 12:27:31 +0000 (13:27 +0100)]
Remove cout
tbaudier [Mon, 7 Dec 2015 12:16:30 +0000 (13:16 +0100)]
Landmark display debug
Simon Rit [Mon, 7 Dec 2015 12:07:19 +0000 (13:07 +0100)]
Added clitkSum to take the sum in one direction, corrected clitkFooImage
and removed it from compilation
tbaudier [Mon, 7 Dec 2015 08:39:49 +0000 (09:39 +0100)]
Debug VF Display
tbaudier [Fri, 4 Dec 2015 13:51:20 +0000 (14:51 +0100)]
Merge branch 'VTK6_Qt5' into VTK6_Qt5_Crop
tbaudier [Fri, 4 Dec 2015 09:44:15 +0000 (10:44 +0100)]
Merge branch 'VTK6_Qt5_Overlay4D' into VTK6_Qt5_Binarize
tbaudier [Fri, 4 Dec 2015 09:35:34 +0000 (10:35 +0100)]
Merge branch 'VTK6_Qt5' into VTK6_Qt5_Binarize
tbaudier [Fri, 4 Dec 2015 08:55:36 +0000 (09:55 +0100)]
Merge branch 'VTK6_Qt5' into VTK6_Qt5_Overlay4D
tbaudier [Thu, 3 Dec 2015 15:37:42 +0000 (16:37 +0100)]
Change some SetInputData into SetInputConnection to be consistent with algorithm pipeplines
tbaudier [Thu, 3 Dec 2015 14:35:40 +0000 (15:35 +0100)]
Fix the slice modification bug with overlay & fusion
tbaudier [Thu, 3 Dec 2015 08:29:03 +0000 (09:29 +0100)]
The animation with a 4D Overlay works
Add the connection between the Overlay Mapper and the Overlay Reslice in the SetOverlay function
tbaudier [Wed, 2 Dec 2015 11:06:36 +0000 (12:06 +0100)]
Real-time cropping works
tbaudier [Wed, 2 Dec 2015 09:29:15 +0000 (10:29 +0100)]
Merge branch 'VTK6_Qt5' into VTK6_Qt5_Binarize
tbaudier [Wed, 2 Dec 2015 09:08:10 +0000 (10:08 +0100)]
The binarization result is automatically displayed after apply
Change the order of Initialization of Slicers
tbaudier [Tue, 1 Dec 2015 13:18:13 +0000 (14:18 +0100)]
Remove duplicate header include
tbaudier [Tue, 1 Dec 2015 13:10:02 +0000 (14:10 +0100)]
ROI Debug
Add AllVisibleContourROIToggled(true) to avoid contour freezing after initialization
tbaudier [Mon, 30 Nov 2015 13:01:03 +0000 (14:01 +0100)]
ROI Debug
Real-time Display Delay Debug
Add test tool (display a sphere in front of the image)
tbaudier [Fri, 27 Nov 2015 12:48:47 +0000 (13:48 +0100)]
Real-time Display Debug
Add SetOpacity(0.995)
tbaudier [Wed, 25 Nov 2015 10:14:49 +0000 (11:14 +0100)]
Correct Bounds in Input Contour Mapper
Change SetInputData to SetInputConnection
The real-time display doesn't work yet
tbaudier [Mon, 23 Nov 2015 14:41:37 +0000 (15:41 +0100)]
Calculation of Rotation & Translation
Good ?
The slice Number is wrong
tbaudier [Thu, 19 Nov 2015 14:35:02 +0000 (15:35 +0100)]
ROI & Contour Debug Try
tbaudier [Thu, 19 Nov 2015 14:32:27 +0000 (15:32 +0100)]
Crop Debug Try
tbaudier [Thu, 19 Nov 2015 14:29:58 +0000 (15:29 +0100)]
Rigid Registration & Overlay Debug try
tbaudier [Thu, 19 Nov 2015 14:20:57 +0000 (15:20 +0100)]
First Modification for Qt5 & VTK6
Change GetExtent() into DATA_EXTENT or WHOLE_EXTENT according context
Open File Debug
Corner Information Display Debug
Cross Cursor Display Debug
Overlay Debug
Fusion Debug
Rigid Registration Debug (without overlay)
David Sarrut [Tue, 10 Nov 2015 14:25:30 +0000 (15:25 +0100)]
delete vim file (vi is evil ; emacs rocks)
David Sarrut [Tue, 10 Nov 2015 14:25:01 +0000 (15:25 +0100)]
add eval to take param into account
Thomas Cajgfinger [Tue, 29 Sep 2015 14:39:23 +0000 (16:39 +0200)]
Change in headers order
David Sarrut [Wed, 23 Sep 2015 19:56:41 +0000 (21:56 +0200)]
Merge branch 'master' of https://github.com/dsarrut/VV
Brent Huisman [Tue, 15 Sep 2015 13:42:23 +0000 (15:42 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Brent Huisman [Tue, 15 Sep 2015 13:42:01 +0000 (15:42 +0200)]
Modified gate_job_cluster.job to request 3GB by default.
Simon Rit [Tue, 15 Sep 2015 09:39:00 +0000 (11:39 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 15 Sep 2015 09:38:06 +0000 (11:38 +0200)]
Changed qt git url
Simon Rit [Tue, 15 Sep 2015 09:37:44 +0000 (11:37 +0200)]
Sync RTK files with the RTK public repo
Brent Huisman [Tue, 8 Sep 2015 14:48:23 +0000 (16:48 +0200)]
Merge branch 'master' of git://git.creatis.insa-lyon.fr/clitk
Brent Huisman [Tue, 8 Sep 2015 14:38:42 +0000 (16:38 +0200)]
Added PixelTypeDownCast specialization for double to double 'conversion'.
Simon Rit [Wed, 24 Jun 2015 08:50:44 +0000 (10:50 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Wed, 24 Jun 2015 08:49:06 +0000 (10:49 +0200)]
Fixes for ITK v4.8rc02
Cyril Mory [Wed, 10 Jun 2015 09:13:18 +0000 (11:13 +0200)]
Fixed MatrixTransformToVF's option "--like" with ITK > 4.6
Simon Rit [Fri, 24 Apr 2015 23:43:37 +0000 (01:43 +0200)]
Fix enum define that conflicts with system macro on mac os
Simon Rit [Fri, 24 Apr 2015 22:46:13 +0000 (00:46 +0200)]
Fix for MacOS
David Sarrut [Wed, 25 Feb 2015 09:05:46 +0000 (10:05 +0100)]
More tolerant stat file merging
David Sarrut [Wed, 18 Feb 2015 09:48:47 +0000 (10:48 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
catherine quinones [Thu, 12 Feb 2015 15:04:44 +0000 (16:04 +0100)]
changed #!/usr/bin/env bash to #! /usr/local/bin/bash -lx
catherine quinones [Thu, 12 Feb 2015 15:03:38 +0000 (16:03 +0100)]
changed #!/usr/bin/env bash to #! /usr/local/bin/bash -lx
catherine quinones [Wed, 11 Feb 2015 15:23:27 +0000 (16:23 +0100)]
changed /usr/bin/env to /bin/env and added date before and after the data transfer
catherine quinones [Wed, 11 Feb 2015 11:25:33 +0000 (12:25 +0100)]
changed /usr/bin/env to /bin/env
added date before and after the job data transfer
David Sarrut [Tue, 6 Jan 2015 14:11:34 +0000 (15:11 +0100)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Presles Benoît [Tue, 16 Dec 2014 11:01:31 +0000 (12:01 +0100)]
the barycenter tool is the same as the image moment tool - so we delete it
Presles Benoît [Tue, 16 Dec 2014 10:42:37 +0000 (11:42 +0100)]
new tool to calculate the barycenter of a binary image
Simon Rit [Tue, 25 Nov 2014 06:51:24 +0000 (07:51 +0100)]
Improved robustness of ImagX xml file reader
David Sarrut [Tue, 4 Nov 2014 10:33:31 +0000 (11:33 +0100)]
Add dosenormafactor parameter
David Sarrut [Tue, 4 Nov 2014 09:13:25 +0000 (10:13 +0100)]
Correct else position
David Sarrut [Tue, 4 Nov 2014 09:13:02 +0000 (10:13 +0100)]
correct : with ;
David Sarrut [Tue, 4 Nov 2014 09:12:37 +0000 (10:12 +0100)]
protect FATAL macro
Simon Rit [Tue, 21 Oct 2014 05:47:12 +0000 (07:47 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 21 Oct 2014 05:46:21 +0000 (07:46 +0200)]
Added direction to --like option
Agata Krason [Thu, 16 Oct 2014 16:16:44 +0000 (18:16 +0200)]
Remove unusable code.
Agata Krason [Thu, 16 Oct 2014 16:01:53 +0000 (18:01 +0200)]
Modification cumulative dvh.
Simon Rit [Mon, 13 Oct 2014 11:50:22 +0000 (13:50 +0200)]
Added --force option to gate_power_merge.sh
Simon Rit [Wed, 8 Oct 2014 11:54:24 +0000 (13:54 +0200)]
Added more options to clitkImageUncertainty, default should be identical
David Sarrut [Fri, 5 Sep 2014 14:12:14 +0000 (16:12 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Thu, 4 Sep 2014 10:19:23 +0000 (12:19 +0200)]
Fixed typo
Simon Rit [Tue, 2 Sep 2014 06:38:26 +0000 (08:38 +0200)]
COMP: ITK v4.6
Simon Rit [Tue, 2 Sep 2014 06:36:45 +0000 (08:36 +0200)]
Fix missing breaks + handle default in enum
David Sarrut [Mon, 25 Aug 2014 08:15:01 +0000 (10:15 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Catherine-Therese Quinones [Tue, 29 Jul 2014 11:58:32 +0000 (13:58 +0200)]
Fix for default parameter (with Simon)
David Sarrut [Wed, 16 Jul 2014 16:08:26 +0000 (18:08 +0200)]
Correct 'else'
David Sarrut [Wed, 16 Jul 2014 16:06:23 +0000 (18:06 +0200)]
Correct DDS
David Sarrut [Tue, 15 Jul 2014 06:04:09 +0000 (08:04 +0200)]
Protect the FATAL macro
Simon Rit [Tue, 8 Jul 2014 14:35:35 +0000 (16:35 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Simon Rit [Tue, 8 Jul 2014 14:34:58 +0000 (16:34 +0200)]
Fix for parameters passed to Gate
Agata Krason [Fri, 13 Jun 2014 13:32:18 +0000 (15:32 +0200)]
Modified --dvhistogram option.
David Sarrut [Fri, 13 Jun 2014 12:24:31 +0000 (14:24 +0200)]
Correct display of label number even if image of char
David Sarrut [Fri, 13 Jun 2014 11:42:59 +0000 (13:42 +0200)]
Small change in error message.
Agata Krason [Thu, 12 Jun 2014 18:37:32 +0000 (20:37 +0200)]
Remove clitkDVH tool and add --dvhistogram option to clitkImageStatistics.
David Sarrut [Tue, 10 Jun 2014 13:59:21 +0000 (15:59 +0200)]
Merge branch 'master' of git.creatis.insa-lyon.fr:clitk
Hans Johnson [Thu, 5 Jun 2014 15:59:00 +0000 (10:59 -0500)]
STYLE: Move CMake commands to match new conventions
The next step in removing end-of-lines is to run through all the
CMakeLists.txt files and clean them up.
This also changes all the key words to lower
case. The primary reason for changing key words is that all documentation for
CMakeLists.txt now shows the key words as lower case. Even the printed
“Mastering CMake v5” uses lower case. I’ve come across this several
times in my class where students stumble over the fact that the
documentation about Cmake does not match the implementation in ITK.
I have a script (a wrapper around a vim macro) written that can make
these substituions reliably (Tested on the BRAINS tree, the Slicer3
tree, and the ITK tree without causing any errors). more complete
documentaiton can be found attached to
Hans Johnson [Thu, 5 Jun 2014 14:43:10 +0000 (09:43 -0500)]
COMP: First Mac 10.9 build fixes.
This patch probably includes a few items that are
not strictly necessary, but during the fumbling
around to find a working solution, these
were the identified failures.
Updating VTK and ITK were key components to
make this process work.
Hans Johnson [Sat, 31 May 2014 14:01:12 +0000 (09:01 -0500)]
COMP: Update ITK and VTK
ITK and VTK updates allow building with c++11 on
mavericks with the latest apple clang compiler.
Hans Johnson [Sat, 31 May 2014 12:59:26 +0000 (07:59 -0500)]
COMP: C++11 identified type missmatches
rtkHisImageIO.cxx:149:53: error: constant
expression evaluates to 134 which cannot be narrowed to type 'char'
[-Wc++11-narrowing]