From 8c9faa21443792c8fbc6ffcc723ba300d733871e Mon Sep 17 00:00:00 2001 From: jean-pierre roux Date: Mon, 14 Jun 2010 08:48:45 +0000 Subject: [PATCH] Use shorter names for 'Study description' --- lib/src1/bruker2dicom.cxx | 63 ++++++++++++++++++++------------------- 1 file changed, 32 insertions(+), 31 deletions(-) diff --git a/lib/src1/bruker2dicom.cxx b/lib/src1/bruker2dicom.cxx index bf947e7..b1e9392 100644 --- a/lib/src1/bruker2dicom.cxx +++ b/lib/src1/bruker2dicom.cxx @@ -221,7 +221,10 @@ void Bruker2Dicom::DealWithSingleStudyDirectory (GDCM_NAME_SPACE::DirListType &f subject_study_name = "defStudyName"; // Why not? } // subject_name is already in 'Patient Name' - strStudyDescr = /*subject_name + "." + */ subject_study_name + "." + subject_entry + "." + subject_position + "." + subject_date; + if (0) // We don't realy need so much information for 'Study' + strStudyDescr = /*subject_name + "." + */ subject_study_name + "." + subject_entry + "." + subject_position + "." + subject_date; + else + strStudyDescr = /*subject_name + "." + */ subject_study_name /*+ "." + subject_entry + "." + subject_position + "." + subject_date*/; // creation directory : 'nom de la Study' @@ -1196,7 +1199,7 @@ void Bruker2Dicom::dealWithCarto(GDCM_NAME_SPACE::DirListType &fileNames, int NX int Bruker2Dicom::CheckUserDirectory(std::string &userDirName) { GDCM_NAME_SPACE::DirList dirList(userDirName, false, true); // DON'T get recursively the list of files - + GDCM_NAME_SPACE::DirListType fileNames; fileNames = dirList.GetFilenames(); @@ -1219,7 +1222,7 @@ int Bruker2Dicom::CheckUserDirectory(std::string &userDirName) acqpFound= true; // user passes a 'serie', not a 'study' else acqpFound = false; // user passed a 'non study' directory; Hope it's a 'set of studies' directory! - + int type; if (subjectFound ) type = 1; // user passed a 'study else if (acqpFound) type = 2; // user passed a 'serie' @@ -1281,7 +1284,7 @@ void Bruker2Dicom::cleanString(std::string &s) l--; s = s.substr(0, l); } - + if (s[0] == '<') s= s.substr(1,l-2); std::string repChar("_"); @@ -1364,7 +1367,7 @@ std::vector Bruker2Dicom::CreateImageSet ( ) br_acqp.SetLoopStructure(); std::vector tempVect = br_acqp.GetLoopStructure() ; std::map map = br_acqp.GetBrukerHeaderMap(); - + bool result = br_acqp.ObjectVaryingProperties.init(map,tempVect); if (result == false) @@ -1387,7 +1390,6 @@ std::vector Bruker2Dicom::CreateImageSet ( ) // Just for checking /* - std::vector > imageOrientation; std::vector imagePosition; for(int i=0;iInsertEntryString("1",0x0028,0x0103, "US"); // Pixel Representation - + // Set the samples per pixel // 1:Grey level, 3:RGB file->InsertEntryString("1",0x0028,0x0002, "US"); // Samples per Pixel @@ -1476,25 +1478,25 @@ void Bruker2Dicom::MakeDicomImage(unsigned char *tabPixels, str.str(""); str << spacingX << "\\" << spacingY; file->InsertEntryString(str.str(),0x0028,0x0030, "DS"); // Pixel Spacing - + // 0018 0050 DS 1 Slice Thickness str.str(""); str << sliceDistance; file->InsertEntryString(str.str(),0x0018,0x0050, "DS"); - + // 0020 0011 IS 1 Series Number str.str(""); str << serieNumber; file->InsertEntryString(str.str(),0x0020,0x0011, "IS"); - + // 0020|0013 [IS] [Instance Number] instanceNumber++; str.str(""); str << instanceNumber; file->InsertEntryString(str.str(),0x0020,0x0013, "IS"); - + // 1.2.840.10008.5.1.4.1.1.4.1 : Enhanced MR Image Storage - // file->InsertEntryString("1.2.840.10008.5.1.4.1.1.4.1" , 0x0002, 0x0002, "UI"); // [Media Storage SOP Class UID] + // file->InsertEntryString("1.2.840.10008.5.1.4.1.1.4.1" , 0x0002, 0x0002, "UI"); // [Media Storage SOP Class UID] // file->InsertEntryString("1.2.840.10008.5.1.4.1.1.4.1" , 0x0008, 0x0016, "UI"); // [SOP Class UID] // OK : MR is NOT multiframe, but I want just a quick an dirty solution @@ -1509,7 +1511,7 @@ void Bruker2Dicom::MakeDicomImage(unsigned char *tabPixels, file->InsertEntryString(studyUID, 0x0020, 0x000d, "UI"); file->InsertEntryString(serieUID, 0x0020, 0x000e, "UI"); - + // 0008 0020 DA 1 Study Date // 0008 0030 TM 1 Study Time @@ -1542,7 +1544,7 @@ std::cout << "charImageOrientation " << imageSet[imgNum].getRotationMatrixRPS2XYZ()[1][0], imageSet[imgNum].getRotationMatrixRPS2XYZ()[1][1], imageSet[imgNum].getRotationMatrixRPS2XYZ()[1][2] ) ; - + file->InsertEntryString(charImageOrientation,0x0020,0x0037, "DS"); // 0020 0032 DS 3 Image Position (Patient) @@ -1552,13 +1554,12 @@ std::cout << "charImageOrientation " << imageSet[imgNum].getTranslationVectorRPS2XYZ()[0], imageSet[imgNum].getTranslationVectorRPS2XYZ()[1], imageSet[imgNum].getTranslationVectorRPS2XYZ()[2]); - + file->InsertEntryString(charImagePosition,0x0020,0x0032, "DS"); //0020 0032 DS 3 Image Position (Patient) - - + // Private creator /* - + 0029|0010 [LO] [Private Creator] [CREATIS HEADER ] 0029|0011 [LO] [Private Creator] [CREATIS for BRUKER to DICOM] 0029|1031 [LO] [] [4.0.7571167 ] @@ -1592,46 +1593,46 @@ std::cout << "charImageOrientation " << > 138 1600 > */ - + file->InsertEntryString("CREATIS HEADER", 0x0029,0x0010, "LO"); file->InsertEntryString("CREATIS FOR BRUKER-TO-DICOM", 0x0029,0x0011, "LO"); - + BrukerFieldData brf_method = br_method.GetFieldData("Method"); const std::vector method = brf_method.GetStringValue(); // std::string method = br_method.GetFieldData("Method").GetStringValue(); file->InsertEntryString(method[0], 0x0029,0x0100, "LO"); - + std::cout << " method[" << method[0] << "]" << std::endl; if (method[0] == "DtiEpi" || method[0] == "DtiStandard") { // const std::vector NDiffDir = br_method.GetFieldData("PVM_DwNDiffDir").GetIntValue(); BrukerFieldData brf_NDiffDir = br_method.GetFieldData("PVM_DwNDiffDir"); const std::vector NDiffDir = brf_NDiffDir.GetIntValue(); - + //const std::vector NDiffExpEach = br_method.GetFieldData("PVM_DwNDiffExpEach").GetIntValue(); BrukerFieldData brf_NDiffExpEach = br_method.GetFieldData("PVM_DwNDiffExpEach"); const std::vector NDiffExpEach =brf_NDiffExpEach.GetIntValue(); - + // const std::vector AoImages = br_method.GetFieldData("PVM_DwAoImages").GetIntValue(); BrukerFieldData brf_AoImages = br_method.GetFieldData("PVM_DwAoImages"); const std::vector AoImages = brf_AoImages.GetIntValue(); - + BrukerFieldData brf_DwBvalEach = br_method.GetFieldData("PVM_DwBvalEach"); const std::vector DwBvalEach = brf_DwBvalEach.GetDoubleValue(); - + std::cout << "nb directions : " << NDiffDir[0] << " nb valeurs de b par direction : " << NDiffExpEach[0] << " nb images for b=0 : " << AoImages[0] << std::endl; - + str.str(""); str << NDiffDir[0]; - file->InsertEntryString(str.str(),0x0029,0x0101,"US"); // directions + file->InsertEntryString(str.str(),0x0029,0x0101,"US"); // nb de directions str.str(""); str << NDiffExpEach[0]; - file->InsertEntryString(str.str(),0x0029,0x0102,"US"); // valeurs de b par direction + file->InsertEntryString(str.str(),0x0029,0x0102,"US"); // nb valeurs de b par direction str.str(""); str << AoImages[0]; - file->InsertEntryString(str.str(),0x0029,0x0103,"US"); // image pour b=0 + file->InsertEntryString(str.str(),0x0029,0x0103,"US"); // nb images pour b=0 str.str(""); for (unsigned int i=0; iSetContentType(contentType); - + // cast is just to avoid warnings (*no* conversion is performed) //fileH->SetImageData((uint8_t *)img,int(maxX*maxY)*sizeof(uint16_t)); // troubles when maxX, mayY are *actually* float! -- 2.45.1