From 9a3e04e66ebadd75cb36feb2c1c489fbc6a5e2c3 Mon Sep 17 00:00:00 2001
From: Romulo Pinho <romulo.pinho@lyon.unicancer.fr>
Date: Tue, 26 Feb 2013 15:28:12 +0100
Subject: [PATCH] Revert "new tool: clitkDicomRTDose2Image"

This reverts commit 9c1d9afdf7f7f89aecc989b0a159d22a3745cfe2.
---
 tools/CMakeLists.txt             |  5 --
 tools/clitkDicomRTDose2Image.cxx | 99 --------------------------------
 tools/clitkDicomRTDose2Image.ggo |  8 ---
 3 files changed, 112 deletions(-)
 delete mode 100644 tools/clitkDicomRTDose2Image.cxx
 delete mode 100644 tools/clitkDicomRTDose2Image.ggo

diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
index edc6864..7193772 100644
--- a/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@ -34,11 +34,6 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkDicom2Image clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicom2Image)
 
-  WRAP_GGO(clitkDicomRTDose2Image_GGO_C clitkDicomRTDose2Image.ggo)
-  ADD_EXECUTABLE(clitkDicomRTDose2Image clitkDicomRTDose2Image.cxx ${clitkDicomRTDose2Image_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkDicomRTDose2Image clitkCommon ${ITK_LIBRARIES})
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTDose2Image)
-
   WRAP_GGO(clitkDicomWave2Text_GGO_C clitkDicomWave2Text.ggo)
   ADD_EXECUTABLE(clitkDicomWave2Text clitkDicomWave2Text.cxx ${clitkDicomWave2Text_GGO_C})
   TARGET_LINK_LIBRARIES(clitkDicomWave2Text clitkCommon ${ITK_LIBRARIES})
diff --git a/tools/clitkDicomRTDose2Image.cxx b/tools/clitkDicomRTDose2Image.cxx
deleted file mode 100644
index ba068d2..0000000
--- a/tools/clitkDicomRTDose2Image.cxx
+++ /dev/null
@@ -1,99 +0,0 @@
-// clitk includes
-#include "clitkDicomRTDose2Image_ggo.h"
-#include "clitkCommon.h"
-#include "clitkImageCommon.h"
-#include "itkImageFileReader.h"
-#include "itkImageFileWriter.h"
-#include <gdcmFile.h>
-#if GDCM_MAJOR_VERSION == 2
-  #include <gdcmImageHelper.h>
-  #include <gdcmAttribute.h>
-  #include <gdcmReader.h>
-#endif
-
-//====================================================================
-int main(int argc, char * argv[])
-{
-  // init command line
-  GGO(clitkDicomRTDose2Image, args_info);
-  //===========================================
-  // Read write serie
-
-  const unsigned int Dim = 3;
-  typedef unsigned int ImageValueType;
-  typedef itk::Image<ImageValueType, Dim> ImageType;
-  typedef itk::ImageFileReader<ImageType> ReaderType;
-  
-  ReaderType::Pointer reader = ReaderType::New();
-  reader->SetFileName(args_info.input_arg);
-  reader->Update();
-  
-  ImageType::Pointer image = reader->GetOutput();
-
-  typedef float DoseValueType;
-  typedef itk::Image<DoseValueType, Dim> DoseImageType;
-  DoseImageType::Pointer output_image = DoseImageType::New();
-  output_image->SetOrigin(image->GetOrigin());
-  output_image->SetSpacing(image->GetSpacing());
-  output_image->SetDirection(image->GetDirection());
-  output_image->SetRegions(image->GetLargestPossibleRegion());
-  output_image->Allocate();
-  
-  typedef itk::ImageRegionConstIterator<ImageType> InputIteratorType;
-  InputIteratorType it_in(image, image->GetLargestPossibleRegion());
-  it_in.GoToBegin();
-
-  typedef itk::ImageRegionIterator<DoseImageType> OutputIteratorType;
-  OutputIteratorType it_out(output_image, output_image->GetLargestPossibleRegion());
-  it_out.GoToBegin();
-  
-  double dose_scale = 1;
-  std::string modality;
-#if GDCM_MAJOR_VERSION == 2
-    if (args_info.verbose_flag)
-      std::cout << "Using GDCM-2.x" << std::endl;
-    gdcm::Reader hreader;
-    hreader.SetFileName(args_info.input_arg);
-    hreader.Read();
-    gdcm::DataSet& ds = hreader.GetFile().GetDataSet();
-    gdcm::Attribute<0x0008, 0x0060> attr_modality;
-    attr_modality.SetFromDataSet(ds);
-    modality = attr_modality.GetValue();
-    if (modality != "RTDOSE") {
-      FATAL("Dicom modality (0x0008, 0x0060) must be RTDOSE.\n");
-    }
-    gdcm::Attribute<0x3004, 0x000e> attr_dose_grid_scaling;
-    attr_dose_grid_scaling.SetFromDataSet(ds);
-    dose_scale = attr_dose_grid_scaling.GetValue();
-#else
-    if (args_info.verbose_flag)
-      std::cout << "Not using GDCM-2.x" << std::endl;
-  gdcm::File *header = new gdcm::File();
-  header->SetFileName(input_files[i]);
-  header->SetMaxSizeLoadEntry(16384); // required ?
-  header->Load();
-  modality = atof(header->GetEntryValue(0x0008, 0x0060).c_str());
-  if (modality != "RTDOSE") {
-    FATAL("Dicom modality (0x0008, 0x0060) must be RTDOSE.\n");
-  }
-  dose_scale = atof(header->GetEntryValue(0x3004,0x000e).c_str());
-#endif
-
-  if (args_info.verbose_flag) {
-    std::cout << "Dose Grid Scaling is " << dose_scale << std::endl;
-  }
-  
-  while (!it_in.IsAtEnd()) {
-    it_out.Set(it_in.Get() * dose_scale);
-    ++it_in;
-    ++it_out;
-  }
-  
-  typedef itk::ImageFileWriter<DoseImageType> WriterType;
-  WriterType::Pointer writer = WriterType::New();
-  writer->SetInput(output_image);
-  writer->SetFileName(args_info.output_arg);
-  writer->Update();
-  
-  return 0;
-}
\ No newline at end of file
diff --git a/tools/clitkDicomRTDose2Image.ggo b/tools/clitkDicomRTDose2Image.ggo
deleted file mode 100644
index 4b3c5fb..0000000
--- a/tools/clitkDicomRTDose2Image.ggo
+++ /dev/null
@@ -1,8 +0,0 @@
-# file clitkDicomRTDose2Image.ggo
-package "clitk"
-version "Try to convert a DICOM RTDOSE file into an image (.hdr, .vox...)"
-
-option "config"	  	 -	"Config file"		 string  	no
-option "verbose"	 v "Verbose"		 	 flag off
-option "input"      i "Input image filename"    string  yes
-option "output"      o "Output image filename"		string 	yes
-- 
2.45.2