From 04b0c0e253aa6a2ea58cefcff7aacda293242125 Mon Sep 17 00:00:00 2001 From: jean-pierre roux Date: Thu, 13 Nov 2008 15:16:17 +0000 Subject: [PATCH] Separate 'graphic pipeline' and 'processing pipeline' --- packages/demo/bbs/appli/demoFiltering1.bbs | 361 +++++++++++---------- 1 file changed, 188 insertions(+), 173 deletions(-) diff --git a/packages/demo/bbs/appli/demoFiltering1.bbs b/packages/demo/bbs/appli/demoFiltering1.bbs index 70171df..b0f596b 100644 --- a/packages/demo/bbs/appli/demoFiltering1.bbs +++ b/packages/demo/bbs/appli/demoFiltering1.bbs @@ -1,4 +1,5 @@ -description "Basic segmentation and filtering of an image" + +description "Basic segmentation and filtering of an image : demoFiltering1-try.bbs" author "jpr@creatis.insa-lyon.fr" category "demo" @@ -11,6 +12,10 @@ include itk include itkvtk include wxvtk +// +// Get the image and determine Slice number, slider size, ... +// ---------------------------------------------------------- + # Here loads hola.mhd include vtk/boxes/bbLoadHola new LoadHola reader @@ -22,7 +27,7 @@ new LoadHola reader #Get image dimensions, ... new ImageProperties mc connect reader.Out mc.In - + #Get number of planes (Z) new GetVectorIntElement gveZ connect mc.Size gveZ.In @@ -33,201 +38,211 @@ new Div div2 connect gveZ.Out div2.In1 set div2.In2 2 -#--------------------------------------------------------------------- +// +// Graphical organization +// ---------------------- -new Slider sliceSider - set sliceSider.Title "Slice" - - #Slider size is the number of planes - connect gveZ.Out sliceSider.Max - #initial slice is the middle one - connect div2.Out sliceSider.In - set sliceSider.ChangeResolution 1 - -new Slider lowerThresholdSlider - set lowerThresholdSlider.Title "LowerThreshold" - set lowerThresholdSlider.Max 50 - set lowerThresholdSlider.In 20 - set lowerThresholdSlider.ChangeResolution 1 - -new Slider lowerOpacitySlider - set lowerOpacitySlider.Title "LowerOpacity" - set lowerOpacitySlider.Max 100 - set lowerOpacitySlider.In 20 - set lowerOpacitySlider.Orientation V +new LayoutSplit mainSplit + set mainSplit.Proportion 50 + set mainSplit.WinHeight 1200 + set mainSplit.WinWidth 1600 + set mainSplit.WinTitle "Processing / Viewing example (demoFiltering1-try.bbs) " -new Slider upperThresholdSlider - set upperThresholdSlider.Title "UpperThreshold" - set upperThresholdSlider.Max 50 - set upperThresholdSlider.In 500 - set upperThresholdSlider.ChangeResolution 1 - -new Slider upperOpacitySlider - set upperOpacitySlider.Title "UpperOpacity" - set upperOpacitySlider.Max 100 - set upperOpacitySlider.In 100 - set upperOpacitySlider.Orientation V -new Slider smoothSlider - set smoothSlider.Title "Smooth" - set smoothSlider.Max 10 - set smoothSlider.In 1 - set smoothSlider.ChangeResolution 1 - -new CommandButton refresh - set refresh.Label "Refresh" - set refresh.In "exec isoextractorthreshold;exec isoextractorsmooth;exec viewer2DImageSegmented; exec viewer2DImageSmooth; exec viewer2DImageOriginal; exec mainSplit" - -new MultipleInputs refreshimages - connect sliceSider.BoxChange refreshimages.In1 - connect upperThresholdSlider.BoxChange refreshimages.In2 - connect lowerThresholdSlider.BoxChange refreshimages.In3 - connect smoothSlider.BoxChange refreshimages.In4 + new LayoutSplit splitUp + set splitUp.Proportion 38 + connect splitUp.Widget mainSplit.Widget1 + + new LayoutLine toolLayout + set toolLayout.Orientation H + connect toolLayout.Widget splitUp.Widget1 + + new LayoutLine sliderLayout + set sliderLayout.Orientation V + connect sliderLayout.Widget toolLayout.Widget1 + + new Slider sliceSlider + set sliceSlider.Title "Slice" + connect sliceSlider.Widget sliderLayout.Widget1 + + new Slider lowerThresholdSlider + set lowerThresholdSlider.Title "LowerThreshold" + set lowerThresholdSlider.Max 50 + set lowerThresholdSlider.In 20 + set lowerThresholdSlider.ChangeResolution 1 + connect lowerThresholdSlider.Widget sliderLayout.Widget2 + + new Slider upperThresholdSlider + set upperThresholdSlider.Title "UpperThreshold" + set upperThresholdSlider.Max 500 + set upperThresholdSlider.In 500 + set upperThresholdSlider.ChangeResolution 1 + connect upperThresholdSlider.Widget sliderLayout.Widget3 + + new Slider smoothSlider + set smoothSlider.Title "Smooth" + set smoothSlider.Max 10 + set smoothSlider.In 1 + set smoothSlider.ChangeResolution 1 + connect smoothSlider.Widget sliderLayout.Widget4 + + new LayoutLine buttonLayout + set buttonLayout.Orientation V + connect buttonLayout.Widget toolLayout.Widget2 + + new ColourSelectorButton colourLower + set colourLower.In "1 1 0" + connect colourLower.Widget buttonLayout.Widget1 + + new ColourSelectorButton colourUpper + set colourUpper.In "1 0 0" + connect colourUpper.Widget buttonLayout.Widget2 + + new CommandButton refresh + set refresh.Label "Refresh (to be used once at start time)" + connect refresh.Widget buttonLayout.Widget3 + + new LayoutLine layout2D + set layout2D.Orientation H + connect layout2D.Widget splitUp.Widget2 + + new Viewer2D viewer2DImageOriginal + connect viewer2DImageOriginal.Widget layout2D.Widget1 + + new Viewer2D viewer2DImageSegmented + connect viewer2DImageSegmented.Widget layout2D.Widget2 + + new Viewer2D viewer2DImageSmooth + connect viewer2DImageSmooth.Widget layout2D.Widget3 -#--------------------------------------------------------------------- + new LayoutSplit layout3D + set layout3D.Orientation H + set layout3D.Proportion 90 + connect layout3D.Widget mainSplit.Widget2 + + new LayoutSplit layoutSurfaces + set layoutSurfaces.Orientation H + set layoutSurfaces.Proportion 50 + connect layoutSurfaces.Widget layout3D.Widget1 + + new Viewer3D viewer3DSurfaceThreshold + connect viewer3DSurfaceThreshold.Widget layoutSurfaces.Widget1 + + new Viewer3D viewer3DSurfaceSmooth + connect viewer3DSurfaceSmooth.Widget layoutSurfaces.Widget2 + + new LayoutLine vSliderLayout + connect vSliderLayout.Widget layout3D.Widget2 + + new Slider lowerOpacitySlider + set lowerOpacitySlider.Title "LowerOpacity" + set lowerOpacitySlider.Min 1 + set lowerOpacitySlider.Max 100 + set lowerOpacitySlider.In 20 + set lowerOpacitySlider.Orientation V + connect lowerOpacitySlider.Widget vSliderLayout.Widget1 + +/* + new Slider upperOpacitySlider + set upperOpacitySlider.Title "UpperOpacity" + set upperOpacitySlider.Max 100 + set upperOpacitySlider.In 100 + set upperOpacitySlider.Orientation V + connect upperOpacitySlider.Widget vSliderLayout.Widget2 +*/ + +// +// End of Graphical organization +// ----------------------------- + +// +// Processing pipeline +// ------------------- -new Viewer2D viewer2DImageOriginal connect reader.Out viewer2DImageOriginal.In - connect sliceSider.Out viewer2DImageOriginal.Slice - connect sliceSider.BoxChange viewer2DImageOriginal.BoxExecute - -#--------------------------------------------------------------------- + connect sliceSlider.Out viewer2DImageOriginal.Slice -new BinaryThresholdImageFilter threshold - connect upperThresholdSlider.Out threshold.UpperThreshold - connect lowerThresholdSlider.Out threshold.LowerThreshold + #Slider size is the number of planes + connect gveZ.Out sliceSlider.Max + #initial slice is the middle one + connect div2.Out sliceSlider.In + set sliceSlider.ChangeResolution 1 + +// Images 2D + + new BinaryThresholdImageFilter threshold set threshold.InsideValue 255 set threshold.OutsideValue 0 + + connect upperThresholdSlider.Out threshold.UpperThreshold + connect lowerThresholdSlider.Out threshold.LowerThreshold connect reader.Out threshold.In - -new Viewer2D viewer2DImageSegmented + connect threshold.Out viewer2DImageSegmented.In - connect sliceSider.Out viewer2DImageSegmented.Slice -// connect sliceSider.BoxChange viewer2DImageSegmented.BoxExecute - connect refreshimages.Out viewer2DImageSegmented.BoxExecute + connect sliceSlider.Out viewer2DImageSegmented.Slice -#--------------------------------------------------------------------- - new ImageGaussianSmooth smooth connect threshold.Out smooth.In connect smoothSlider.Out smooth.StdDevX connect smoothSlider.Out smooth.StdDevY connect smoothSlider.Out smooth.StdDevZ - - -new Viewer2D viewer2DImageSmooth - connect smooth.Out viewer2DImageSmooth.In - connect sliceSider.Out viewer2DImageSmooth.Slice - connect sliceSider.BoxChange viewer2DImageSmooth.BoxExecute - - -#--------------------------------------------------------------------- - -new LayoutLine upLayout - set upLayout.Orientation H - connect viewer2DImageOriginal.Widget upLayout.Widget1 - connect viewer2DImageSegmented.Widget upLayout.Widget2 - connect viewer2DImageSmooth.Widget upLayout.Widget3 - - -new ColourSelectorButton colourLower - set colourLower.In "1 1 0" - -new ColourSelectorButton colourUpper - set colourUpper.In "1 0 0" - -#--------------------------------------------------------------------- - -new Viewer3D viewernvImagethreshold3D -# set viewernvImagethreshold3D.nTypeView "5" - -new IsoSurfaceExtractor isoextractorthreshold - connect threshold.Out isoextractorthreshold.In - set isoextractorthreshold.Opacity 1 - #set isoextractorthreshold.Isovalue 10 -set isoextractorthreshold.Isovalue 100 - connect colourUpper.Out isoextractorthreshold.Colour - connect viewernvImagethreshold3D.Renderer isoextractorthreshold.Renderer - - -#--------------------------------------------------------------------- -new Viewer3D viewernvImageSmooth3D -# set viewernvImageSmooth3D.nTypeView "5" - //connect refreshimages.Out viewernvImageSmooth3D.BoxExecute - + + connect smooth.Out viewer2DImageSmooth.In + connect sliceSlider.Out viewer2DImageSmooth.Slice + + +// Surfaces 3D + +new IsoSurfaceExtractor isoextractorThreshold + connect threshold.Out isoextractorThreshold.In + set isoextractorThreshold.Opacity 1 + set isoextractorThreshold.Isovalue 100 + connect colourUpper.Out isoextractorThreshold.Colour + connect isoextractorThreshold.Out viewer3DSurfaceThreshold.In1 + new Div div3 connect lowerOpacitySlider.Out div3.In1 set div3.In2 100 -new IsoSurfaceExtractor isoextractorsmooth - connect smooth.Out isoextractorsmooth.In - connect div3.Out isoextractorsmooth.Opacity - set isoextractorsmooth.Isovalue 200 - connect colourLower.Out isoextractorsmooth.Colour - connect viewernvImageSmooth3D.Renderer isoextractorsmooth.Renderer - - -#--------------------------------------------------------------------- - -new LayoutSplit downLayout - set downLayout.Orientation H - set downLayout.Proportion 50 - connect viewernvImagethreshold3D.Widget downLayout.Widget1 - connect viewernvImageSmooth3D.Widget downLayout.Widget2 - -new LayoutLine sliderLayout - set sliderLayout.Orientation V - -new LayoutLine buttonLayout - set buttonLayout.Orientation V - connect colourLower.Widget buttonLayout.Widget1 - connect colourUpper.Widget buttonLayout.Widget2 - connect refresh.Widget buttonLayout.Widget3 - -new LayoutLine toolLayout - set toolLayout.Orientation H - connect sliderLayout.Widget toolLayout.Widget1 - connect buttonLayout.Widget toolLayout.Widget2 - - -//new ImageWriter imw -// connect smooth.Out imw.In - connect refresh.BoxChange smooth.BoxExecute +new IsoSurfaceExtractor isoextractorSmooth + connect smooth.Out isoextractorSmooth.In + connect div3.Out isoextractorSmooth.Opacity + set isoextractorSmooth.Isovalue 200 + connect colourLower.Out isoextractorSmooth.Colour + connect isoextractorSmooth.Out viewer3DSurfaceSmooth.In2 + +// Refresh issues -new LayoutLine vSliderLayout - connect lowerOpacitySlider.Widget vSliderLayout.Widget1 - connect upperOpacitySlider.Widget vSliderLayout.Widget2 + new MultipleInputs multInForImageOriginal + connect sliceSlider.BoxChange multInForImageOriginal.In1 + connect refresh.BoxChange multInForImageOriginal.In2 + + new MultipleInputs multInForImageSegmented + connect lowerThresholdSlider.BoxChange multInForImageSegmented.In1 + connect upperThresholdSlider.BoxChange multInForImageSegmented.In2 + connect refresh.BoxChange multInForImageSegmented.In3 -new LayoutSplit layout3D - set layout3D.Orientation H - set layout3D.Proportion 90 - connect downLayout.Widget layout3D.Widget1 - connect vSliderLayout.Widget layout3D.Widget2 - -#--------------------------------------------------------------------- -new LayoutSplit splitUp - set splitUp.Proportion 38 - connect toolLayout.Widget splitUp.Widget1 - connect upLayout.Widget splitUp.Widget2 - - connect sliceSider.Widget sliderLayout.Widget1 - connect lowerThresholdSlider.Widget sliderLayout.Widget2 - connect upperThresholdSlider.Widget sliderLayout.Widget3 - connect smoothSlider.Widget sliderLayout.Widget4 + new MultipleInputs multInForImageSmooth + connect lowerThresholdSlider.BoxChange multInForImageSmooth.In1 + connect upperThresholdSlider.BoxChange multInForImageSmooth.In2 + connect smoothSlider.BoxChange multInForImageSmooth.In3 + connect lowerOpacitySlider.BoxChange multInForImageSmooth.In4 + connect refresh.BoxChange multInForImageSmooth.In5 + + new MultipleInputs multInForSurfaceThreshold + connect refresh.BoxChange multInForSurfaceThreshold.In1 + new MultipleInputs multInForSurfaceSmooth + connect refresh.BoxChange multInForSurfaceSmooth.In1 + + connect multInForImageOriginal.BoxChange viewer2DImageOriginal.BoxExecute + connect multInForImageSegmented.BoxChange viewer2DImageSegmented.BoxExecute + connect multInForImageSmooth.BoxChange viewer2DImageSmooth.BoxExecute + + connect multInForSurfaceThreshold.BoxChange viewer3DSurfaceThreshold.BoxExecute + connect multInForSurfaceSmooth.BoxChange viewer3DSurfaceSmooth.BoxExecute -new LayoutSplit mainSplit - set mainSplit.Proportion 50 - set mainSplit.WinHeight 1200 - set mainSplit.WinWidth 1600 - set mainSplit.WinTitle "Processing / Viewing example (demoFiltering1.bbs) " - connect splitUp.Widget mainSplit.Widget1 - connect layout3D.Widget mainSplit.Widget2 - -#--------------------------------------------------------------------- - -exec isoextractorthreshold -exec isoextractorsmooth + + exec mainSplit -exec mainSplit -- 2.45.1