From 096c4372c96618036c4c950c39da7a750cfe4bfb Mon Sep 17 00:00:00 2001 From: dsarrut Date: Wed, 25 May 2011 08:05:18 +0200 Subject: [PATCH] Add options (threshold and cie) --- .../clitkExtractMediastinalVesselsFilter.h | 61 ++++++++++++++++--- 1 file changed, 53 insertions(+), 8 deletions(-) diff --git a/segmentation/clitkExtractMediastinalVesselsFilter.h b/segmentation/clitkExtractMediastinalVesselsFilter.h index 665f79c..59ff6f7 100644 --- a/segmentation/clitkExtractMediastinalVesselsFilter.h +++ b/segmentation/clitkExtractMediastinalVesselsFilter.h @@ -88,11 +88,42 @@ namespace clitk { itkGetConstMacro(TemporaryForegroundValue, MaskImagePixelType); itkSetMacro(TemporaryForegroundValue, MaskImagePixelType); - itkGetConstMacro(OutputFolder, std::string); - itkSetMacro(OutputFolder, std::string); + itkGetConstMacro(ThresholdHigh, ImagePixelType); + itkSetMacro(ThresholdHigh, ImagePixelType); - itkGetConstMacro(Threshold, ImagePixelType); - itkSetMacro(Threshold, ImagePixelType); + itkGetConstMacro(ThresholdLow, ImagePixelType); + itkSetMacro(ThresholdLow, ImagePixelType); + + itkGetConstMacro(ErosionRadius, int); + itkSetMacro(ErosionRadius, int); + + itkGetConstMacro(DilatationRadius, int); + itkSetMacro(DilatationRadius, int); + + itkGetConstMacro(MaxDistancePostToCarina, double); + itkSetMacro(MaxDistancePostToCarina, double); + itkGetConstMacro(MaxDistanceAntToCarina, double); + itkSetMacro(MaxDistanceAntToCarina, double); + itkGetConstMacro(MaxDistanceLeftToCarina, double); + itkSetMacro(MaxDistanceLeftToCarina, double); + itkGetConstMacro(MaxDistanceRightToCarina, double); + itkSetMacro(MaxDistanceRightToCarina, double); + + itkSetMacro(DebugFlag, bool); + itkGetConstMacro(DebugFlag, bool); + itkBooleanMacro(DebugFlag); + + itkSetMacro(SoughtVesselSeedName, std::string); + itkGetConstMacro(SoughtVesselSeedName, std::string); + + itkSetMacro(SoughtVesselName, std::string); + itkGetConstMacro(SoughtVesselName, std::string); + + itkSetMacro(OutputFilename, std::string); + itkGetConstMacro(OutputFilename, std::string); + + itkSetMacro(MaxNumberOfFoundBifurcation, int); + itkGetConstMacro(MaxNumberOfFoundBifurcation, int); protected: ExtractMediastinalVesselsFilter(); @@ -102,7 +133,7 @@ namespace clitk { virtual void GenerateInputRequestedRegion(); virtual void GenerateData(); - std::string m_OutputFolder; + bool m_DebugFlag; ImagePointer m_Input; MaskImagePointer m_Working_Support; MaskImagePointer m_Mediastinum; @@ -110,12 +141,26 @@ namespace clitk { MaskImagePixelType m_BackgroundValue; MaskImagePixelType m_ForegroundValue; MaskImagePixelType m_TemporaryForegroundValue; - ImagePixelType m_Threshold; + ImagePixelType m_ThresholdHigh; + ImagePixelType m_ThresholdLow; + int m_ErosionRadius; + int m_DilatationRadius; + double m_MaxDistancePostToCarina; + double m_MaxDistanceAntToCarina; + double m_MaxDistanceLeftToCarina; + double m_MaxDistanceRightToCarina; + int m_MaxNumberOfFoundBifurcation; std::vector m_slice_recon; + std::vector m_slice_recon2; + + // Resulting structures + MaskImageType::Pointer m_SoughtVessel; + std::string m_SoughtVesselSeedName; + std::string m_SoughtVesselName; + std::string m_OutputFilename; - void CropSupInf(); - //void SearchBrachioCephalicArtery(int & BCA_first_slice, LabelType & BCA_first_label); + void CropInputImage(); void TrackBifurcationFromPoint(MaskImagePointer & recon, std::vector & slices_recon, MaskImagePointType BCA_p, -- 2.47.1