From 15e0f3df7902cdf1af4a8adfea696a70e084ac80 Mon Sep 17 00:00:00 2001
From: David Sarrut <david.sarrut@creatis.insa-lyon.fr>
Date: Mon, 25 Jul 2011 10:28:01 +0200
Subject: [PATCH] Add clitkImage2DicomRTStruct executable to convert a binary
 image into a dicom-rt struct

---
 tools/clitkImage2DicomRTStruct.cxx | 46 ++++++++++++++++++++++++++++++
 tools/clitkImage2DicomRTStruct.ggo | 20 +++++++++++++
 2 files changed, 66 insertions(+)
 create mode 100644 tools/clitkImage2DicomRTStruct.cxx
 create mode 100644 tools/clitkImage2DicomRTStruct.ggo

diff --git a/tools/clitkImage2DicomRTStruct.cxx b/tools/clitkImage2DicomRTStruct.cxx
new file mode 100644
index 0000000..e48272c
--- /dev/null
+++ b/tools/clitkImage2DicomRTStruct.cxx
@@ -0,0 +1,46 @@
+/*=========================================================================
+  Program:         vv http://www.creatis.insa-lyon.fr/rio/vv
+  Main authors :   XX XX XX
+
+  Authors belongs to: 
+  - University of LYON           http://www.universite-lyon.fr/
+  - Léon Bérard cancer center    http://www.centreleonberard.fr
+  - CREATIS CNRS laboratory      http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+  - BSD       http://www.opensource.org/licenses/bsd-license.php
+  - CeCILL-B  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+
+  =========================================================================*/
+
+#include "clitkImage2DicomRTStructFilter.h"
+#include "clitkDicomRT_StructureSet.h"
+#include "clitkImage2DicomRTStruct_ggo.h"
+
+//--------------------------------------------------------------------
+int main(int argc, char * argv[]) {
+
+  // Init command line
+  GGO(clitkImage2DicomRTStruct, args_info);
+
+  // Read initial 3D image
+  typedef float PixelType;
+  typedef itk::Image<PixelType, 3> ImageType;
+  ImageType::Pointer input = clitk::readImage<ImageType>(args_info.input_arg, true);
+
+  // Create a filter to convert image into dicomRTStruct
+  clitk::Image2DicomRTStructFilter<PixelType> filter;
+  filter.SetInput(input);
+  filter.Update();
+  
+  // Write result
+  clitk::DicomRT_StructureSet::Pointer s = filter.GetDicomRTStruct();
+  s->Write(args_info.output_arg);
+
+  // This is the end my friend 
+  return 0;
+}
diff --git a/tools/clitkImage2DicomRTStruct.ggo b/tools/clitkImage2DicomRTStruct.ggo
new file mode 100644
index 0000000..68334b1
--- /dev/null
+++ b/tools/clitkImage2DicomRTStruct.ggo
@@ -0,0 +1,20 @@
+# file clitkImage2DicomRTStruct.ggo
+package "clitk"
+version "Convert (binary) image to DICOM RT Structure Set (contours)"
+
+option "config"	  	 - "Config file"		     string  	no
+option "verbose"         v "Verbose"			     flag	off
+
+option "input"		 i "Input image file (binary image"  string	yes
+option "output"		 o "Output DicomRT filename"	     string	yes
+
+
+# option "image"		 j "Used to read image info (spacing, origin)"    string	yes
+# option "roi"		 r "ROI to binarize (if -1 = all roi)"	          int    no default="-1"
+
+# option "crop"		 c "Crop binary mask"	         flag off
+
+#option "roi"		 r "ROI to print (ID)"		 int		no
+#option "contour"	 c "contour to print (ID)"	 int            no
+#option "offset"		 o "to display points as image offsets" flag	off
+
-- 
2.47.1