From 15e781be4b87a75be8fe01e56da5eb4435c97786 Mon Sep 17 00:00:00 2001 From: David Sarrut Date: Mon, 17 Oct 2011 10:43:10 +0200 Subject: [PATCH] Change mhd to mha --- .../clitkExtractLymphStation_Supports.txx | 76 +++++++++---------- 1 file changed, 38 insertions(+), 38 deletions(-) diff --git a/segmentation/clitkExtractLymphStation_Supports.txx b/segmentation/clitkExtractLymphStation_Supports.txx index 1fb82f8..2cde97d 100644 --- a/segmentation/clitkExtractLymphStation_Supports.txx +++ b/segmentation/clitkExtractLymphStation_Supports.txx @@ -21,10 +21,10 @@ ExtractStationSupports() m_CarinaZ, true, GetBackgroundValue()); m_ListOfSupports["Support_Superior_to_Carina"] = m_Support_Superior_to_Carina; m_ListOfSupports["Support_Inferior_to_Carina"] = m_Support_Inferior_to_Carina; - writeImage(m_Support_Inferior_to_Carina, "seg/Support_Inf_Carina.mhd"); - this->GetAFDB()->SetImageFilename("Support_Inf_Carina", "seg/Support_Inf_Carina.mhd"); - writeImage(m_Support_Superior_to_Carina, "seg/Support_Sup_Carina.mhd"); - this->GetAFDB()->SetImageFilename("Support_Sup_Carina", "seg/Support_Sup_Carina.mhd"); + writeImage(m_Support_Inferior_to_Carina, "seg/Support_Inf_Carina.mha"); + this->GetAFDB()->SetImageFilename("Support_Inf_Carina", "seg/Support_Inf_Carina.mha"); + writeImage(m_Support_Superior_to_Carina, "seg/Support_Sup_Carina.mha"); + this->GetAFDB()->SetImageFilename("Support_Sup_Carina", "seg/Support_Sup_Carina.mha"); // S1RL Support_SupInf_S1RL(); @@ -57,45 +57,45 @@ ExtractStationSupports() m_ListOfSupports["S11"] = clitk::Clone(m_Support_Inferior_to_Carina); // Store image filenames into AFDB - writeImage(m_ListOfSupports["S1R"], "seg/Support_S1R.mhd"); - this->GetAFDB()->SetImageFilename("Support_S1R", "seg/Support_S1R.mhd"); - writeImage(m_ListOfSupports["S1L"], "seg/Support_S1L.mhd"); - this->GetAFDB()->SetImageFilename("Support_S1L", "seg/Support_S1L.mhd"); + writeImage(m_ListOfSupports["S1R"], "seg/Support_S1R.mha"); + this->GetAFDB()->SetImageFilename("Support_S1R", "seg/Support_S1R.mha"); + writeImage(m_ListOfSupports["S1L"], "seg/Support_S1L.mha"); + this->GetAFDB()->SetImageFilename("Support_S1L", "seg/Support_S1L.mha"); - writeImage(m_ListOfSupports["S2L"], "seg/Support_S2L.mhd"); - this->GetAFDB()->SetImageFilename("Support_S2L", "seg/Support_S2L.mhd"); - writeImage(m_ListOfSupports["S2R"], "seg/Support_S2R.mhd"); - this->GetAFDB()->SetImageFilename("Support_S2R", "seg/Support_S2R.mhd"); + writeImage(m_ListOfSupports["S2L"], "seg/Support_S2L.mha"); + this->GetAFDB()->SetImageFilename("Support_S2L", "seg/Support_S2L.mha"); + writeImage(m_ListOfSupports["S2R"], "seg/Support_S2R.mha"); + this->GetAFDB()->SetImageFilename("Support_S2R", "seg/Support_S2R.mha"); - writeImage(m_ListOfSupports["S3P"], "seg/Support_S3P.mhd"); - this->GetAFDB()->SetImageFilename("Support_S3P", "seg/Support_S3P.mhd"); - writeImage(m_ListOfSupports["S3A"], "seg/Support_S3A.mhd"); - this->GetAFDB()->SetImageFilename("Support_S3A", "seg/Support_S3A.mhd"); + writeImage(m_ListOfSupports["S3P"], "seg/Support_S3P.mha"); + this->GetAFDB()->SetImageFilename("Support_S3P", "seg/Support_S3P.mha"); + writeImage(m_ListOfSupports["S3A"], "seg/Support_S3A.mha"); + this->GetAFDB()->SetImageFilename("Support_S3A", "seg/Support_S3A.mha"); - writeImage(m_ListOfSupports["S4L"], "seg/Support_S4L.mhd"); - this->GetAFDB()->SetImageFilename("Support_S4L", "seg/Support_S4L.mhd"); - writeImage(m_ListOfSupports["S4R"], "seg/Support_S4R.mhd"); - this->GetAFDB()->SetImageFilename("Support_S4R", "seg/Support_S4R.mhd"); + writeImage(m_ListOfSupports["S4L"], "seg/Support_S4L.mha"); + this->GetAFDB()->SetImageFilename("Support_S4L", "seg/Support_S4L.mha"); + writeImage(m_ListOfSupports["S4R"], "seg/Support_S4R.mha"); + this->GetAFDB()->SetImageFilename("Support_S4R", "seg/Support_S4R.mha"); - writeImage(m_ListOfSupports["S5"], "seg/Support_S5.mhd"); - this->GetAFDB()->SetImageFilename("Support_S5", "seg/Support_S5.mhd"); - writeImage(m_ListOfSupports["S6"], "seg/Support_S6.mhd"); - this->GetAFDB()->SetImageFilename("Support_S6", "seg/Support_S6.mhd"); + writeImage(m_ListOfSupports["S5"], "seg/Support_S5.mha"); + this->GetAFDB()->SetImageFilename("Support_S5", "seg/Support_S5.mha"); + writeImage(m_ListOfSupports["S6"], "seg/Support_S6.mha"); + this->GetAFDB()->SetImageFilename("Support_S6", "seg/Support_S6.mha"); - writeImage(m_ListOfSupports["S7"], "seg/Support_S7.mhd"); - this->GetAFDB()->SetImageFilename("Support_S7", "seg/Support_S7.mhd"); + writeImage(m_ListOfSupports["S7"], "seg/Support_S7.mha"); + this->GetAFDB()->SetImageFilename("Support_S7", "seg/Support_S7.mha"); - writeImage(m_ListOfSupports["S8"], "seg/Support_S8.mhd"); - this->GetAFDB()->SetImageFilename("Support_S8", "seg/Support_S8.mhd"); + writeImage(m_ListOfSupports["S8"], "seg/Support_S8.mha"); + this->GetAFDB()->SetImageFilename("Support_S8", "seg/Support_S8.mha"); - writeImage(m_ListOfSupports["S9"], "seg/Support_S9.mhd"); - this->GetAFDB()->SetImageFilename("Support_S9", "seg/Support_S9.mhd"); + writeImage(m_ListOfSupports["S9"], "seg/Support_S9.mha"); + this->GetAFDB()->SetImageFilename("Support_S9", "seg/Support_S9.mha"); - writeImage(m_ListOfSupports["S10"], "seg/Support_S10.mhd"); - this->GetAFDB()->SetImageFilename("Support_S10", "seg/Support_S10.mhd"); + writeImage(m_ListOfSupports["S10"], "seg/Support_S10.mha"); + this->GetAFDB()->SetImageFilename("Support_S10", "seg/Support_S10.mha"); - writeImage(m_ListOfSupports["S11"], "seg/Support_S11.mhd"); - this->GetAFDB()->SetImageFilename("Support_S11", "seg/Support_S11.mhd"); + writeImage(m_ListOfSupports["S11"], "seg/Support_S11.mha"); + this->GetAFDB()->SetImageFilename("Support_S11", "seg/Support_S11.mha"); WriteAFDB(); } //-------------------------------------------------------------------- @@ -544,7 +544,7 @@ void clitk::ExtractLymphStationsFilter:: Support_S5() { - StartNewStep("[Support] Sup-Inf limits S5 with aorta"); + StartNewStep("[Support] Sup-Inf limits S5 with Aorta and MainPulmonaryArtery"); // Initial S5 support MaskImagePointer S5 = @@ -555,11 +555,11 @@ Support_S5() // Inf limits with "upper rim of the left main pulmonary artery" // For the moment only, it will change. - MaskImagePointer PulmonaryTrunk = this->GetAFDB()->template GetImage("PulmonaryTrunk"); + MaskImagePointer MainPulmonaryArtery = this->GetAFDB()->template GetImage("MainPulmonaryArtery"); MaskImagePointType p; p[0] = p[1] = p[2] = 0.0; // to avoid warning - clitk::FindExtremaPointInAGivenDirection(PulmonaryTrunk, GetBackgroundValue(), 2, false, p); - p[2] += PulmonaryTrunk->GetSpacing()[2]; + clitk::FindExtremaPointInAGivenDirection(MainPulmonaryArtery, GetBackgroundValue(), 2, false, p); + p[2] += MainPulmonaryArtery->GetSpacing()[2]; // Cut Sup/Inf S5 = clitk::CropImageAlongOneAxis(S5, 2, p[2], sup, true, GetBackgroundValue()); -- 2.47.1