From 1709248f43dcb7745909d1d59109f553ee0ae700 Mon Sep 17 00:00:00 2001
From: Eduardo DAVILA <davila@ei-ed-606.univ-lyon1.fr>
Date: Fri, 13 Dec 2019 12:57:59 +0100
Subject: [PATCH] #3326 BBTK Feature New Normal  -  gdcm vtk
 GetXCoherentInfoGdcmReader box option to rean or not the raw data or just the
 dicom tags

---
 .../bbgdcmvtkGetXCoherentInfoGdcmReader.cxx   | 45 +++++++------------
 .../src/bbgdcmvtkGetXCoherentInfoGdcmReader.h |  2 +
 2 files changed, 19 insertions(+), 28 deletions(-)

diff --git a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
index aeb0f78..2bbf542 100644
--- a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
+++ b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
@@ -87,7 +87,6 @@ vtkImageData* GetXCoherentInfoGdcmReader::CreateDefaultImage()
 #if defined USE_GDCM
 void GetXCoherentInfoGdcmReader::Process()
 {
-printf("EED GetXCoherentInfoGdcmReader::Process Start\n");
  // Read the *first* image file (a SET of file names is given as input) 
    f = GDCM_NAME_SPACE::File::New();
 
@@ -97,7 +96,6 @@ printf("EED GetXCoherentInfoGdcmReader::Process Start\n");
 	} else {
 		f->SetFileName( "" );
 	} // if
-printf("EED GetXCoherentInfoGdcmReader::Process 1\n");
 
    bool res = f->Load();  
    if ( !res )
@@ -108,7 +106,6 @@ printf("EED GetXCoherentInfoGdcmReader::Process 1\n");
       	return;
    } // if res
 
-try {
  // Get info from the first image file
    int i;
    std::vector<double> v_iop;
@@ -120,7 +117,6 @@ try {
       v_iop.push_back(iop[i]);
 	} // for i
    bbSetOutputIOP(v_iop );
-printf("EED GetXCoherentInfoGdcmReader::Process 2\n");
  
    std::vector<double> v_ipp;
    float ipp[3];
@@ -136,8 +132,6 @@ printf("EED GetXCoherentInfoGdcmReader::Process 2\n");
    sh = GDCM_NAME_SPACE::SerieHelper::New();
    std::vector<std::string> gii = bbGetInputIn();
 
-printf("EED GetXCoherentInfoGdcmReader::Process 3\n");
-   
    for(std::vector<std::string>::iterator it = gii.begin();
                                           it != gii.end();
                                         ++it)
@@ -148,17 +142,13 @@ printf("EED GetXCoherentInfoGdcmReader::Process 3\n");
    GDCM_NAME_SPACE::FileList::const_iterator it;
    GDCM_NAME_SPACE::FileList *l;
 
-printf("EED GetXCoherentInfoGdcmReader::Process 4\n");
    // Should only contain one!
    l = sh->GetFirstSingleSerieUIDFileSet();
-printf("EED GetXCoherentInfoGdcmReader::Process 5\n");
 
 	if (l==NULL)
 	{	
-		printf("EED GetXCoherentInfoGdcmReader::Process Warnning (1) not coherent list/file \n");
 		return;
 	}
-printf("EED GetXCoherentInfoGdcmReader::Process 6\n");
 
    double zspacing = 0.;
    sh->OrderFileList(l); // this one should compute the *actual* Z Spacing!
@@ -200,24 +190,22 @@ printf("EED GetXCoherentInfoGdcmReader::Process 6\n");
    } // for iitt
    bbSetOutputDicomInfo( vectormapinfodicom );
 
-   if (reader!=NULL)
-   { 
-      reader->Delete();
-      reader = NULL;
-   }
-   reader = vtkGdcmReader::New();
-	//EED 21 mars 2012  FLIP probleme  ..PLOP..
-	reader->SetFlipY(false);
-   //reader->SetFileName( bbGetInputIn().c_str() );
-   reader->SetCoherentFileList(l);
-   reader->Update();
-   reader->GetOutput();
-   bbSetOutputOut( reader->GetOutput() );
-} catch (...) {
-		printf("EED GetXCoherentInfoGdcmReader::Process Warnning (2) not coherent list/file \n");
-		return;
-} // try
-
+	if (bbGetInputReadRaw()==true)
+	{
+	   if (reader!=NULL)
+	   { 
+		  reader->Delete();
+		  reader = NULL;
+	   }
+	   reader = vtkGdcmReader::New();
+		//EED 21 mars 2012  FLIP probleme  ..PLOP..
+		reader->SetFlipY(false);
+	   //reader->SetFileName( bbGetInputIn().c_str() );
+	   reader->SetCoherentFileList(l);
+	   reader->Update();
+	   reader->GetOutput();
+	   bbSetOutputOut( reader->GetOutput() );
+	} // if bGetInputReadRaw
 }
 #endif
 // endif USE_GDCM
@@ -308,6 +296,7 @@ void GetXCoherentInfoGdcmReader::bbUserSetDefaultValues()
    std::vector<std::string> init;
    init.push_back("");
    bbSetInputIn(init);  
+   bbSetInputReadRaw(true);  
    //reader=NULL;   /// \TODO fixme JPR
 }
 
diff --git a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.h b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.h
index f0b3c21..41c2ea7 100644
--- a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.h
+++ b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.h
@@ -60,6 +60,7 @@ class bbgdcmvtk_EXPORT GetXCoherentInfoGdcmReader
   BBTK_DECLARE_INPUT(In				, std::vector<std::string>);
   BBTK_DECLARE_INPUT(IPPSort		, bool);
   BBTK_DECLARE_INPUT(DicomTags		, std::vector<std::string>);
+  BBTK_DECLARE_INPUT(ReadRaw		, bool);
   
   BBTK_DECLARE_OUTPUT(Out			, vtkImageData *);
   BBTK_DECLARE_OUTPUT(IPP			, std::vector<double>);
@@ -96,6 +97,7 @@ BBTK_BEGIN_DESCRIBE_BLACK_BOX(GetXCoherentInfoGdcmReader,bbtk::AtomicBlackBox);
   BBTK_INPUT(GetXCoherentInfoGdcmReader,In				,"List of Dicom image file names", std::vector<std::string>,"");
   BBTK_INPUT(GetXCoherentInfoGdcmReader,IPPSort			,"Sort on Image Position Patient", bool,"");
   BBTK_INPUT(GetXCoherentInfoGdcmReader,DicomTags		,"Dicom Tags (vector of Dicom tags ex: D0028_0030  D0020_0037)", std::vector<std::string>,"");
+  BBTK_INPUT(GetXCoherentInfoGdcmReader,ReadRaw		,"(default true) false: not read raw just dicom tags", bool,"");
 
   BBTK_OUTPUT(GetXCoherentInfoGdcmReader,Out			,"Output image"					, vtkImageData *,"");
   BBTK_OUTPUT(GetXCoherentInfoGdcmReader,IPP			,"Image Position (Patient)"		, std::vector<double>,"");
-- 
2.45.1