From 4e8bc338cc4874a01bb390295bad6179a585c081 Mon Sep 17 00:00:00 2001 From: Romulo Pinho Date: Fri, 5 Aug 2011 11:37:04 +0200 Subject: [PATCH] resolving script name conflicts --- scripts/{common.sh => midp_common.sh} | 0 scripts/midp_template.conf | 67 +++++++++++++++++++++++++++ 2 files changed, 67 insertions(+) rename scripts/{common.sh => midp_common.sh} (100%) create mode 100644 scripts/midp_template.conf diff --git a/scripts/common.sh b/scripts/midp_common.sh similarity index 100% rename from scripts/common.sh rename to scripts/midp_common.sh diff --git a/scripts/midp_template.conf b/scripts/midp_template.conf new file mode 100644 index 0000000..8fde2c8 --- /dev/null +++ b/scripts/midp_template.conf @@ -0,0 +1,67 @@ +############################################################################### +# +# FILE: midp_template.conf +# AUTHOR: Rômulo Pinho 05/08/2011 +# +# Template configuration file for create_midP-2.0.sh. Values between <> must be +# changed according to the methods. +# +############################################################################### + +# output directories +vf_dir="" +midp_dir="" +output_dir="" +log_dir="" + +# script step to be executed (mask, registration, midp, all) +# midp depends on registration, which depends on mask +step="all" + +# mask parameters +# +# interpolation algorithm for resampling (see clitkResampleImage) +mask_interpolation_algorithm="" +# interpolation spacing (in mm) +mask_interpolation_spacing= + +# registration method (blut, elastix) +method="" + +# registration parameters (depend on registration method - see descriptions) +# + +# b-spline spacing (blut, elastix) +bspline_spacing= + +# multi-resolution levels +nb_levels= + +# number of histogram bins (blut, elastix) +nb_hist_bins= + +# number of points (samples) to calculate metric +# (blut: percentage of image size; elastix: absolute number) +nb_samples= + +# algorithm used to sample points for the metric +# (elastix: see docs) +sampling_algo="" + +# number of iterations (blut, elastix) +nb_iter= + +# tolerance (stop condition for the metric) (blut) +tolerance= + +# metric used in the registration +# (blut: see clitkBLUTDIR; elastix: see docs) +metric="" + +# interpolation type +# (blut: see clitkBLUTDIR; elastix: see docs) +interpolator="" + +# optmizer +# (blut: see clitkBLUTDIR; elastix: see docs) +optimizer="" -- 2.47.1