From 566b55b48f939dbfbf5219d5f6c20c8c91ba56c3 Mon Sep 17 00:00:00 2001
From: guigues <guigues>
Date: Tue, 1 Apr 2008 12:26:03 +0000
Subject: [PATCH] *** empty log message ***

---
 kernel/appli/bbfy/bbfy.cpp                    | 17 ++++++
 packages/itk/bbs/boxes/bbDICOMDirReader.bbs   | 15 ++++++
 .../itk/src/bbitkDICOMSeriesFileNames.xml     | 54 +++++++++++++++++++
 packages/wxvtk/bbs/boxes/bbSimpleSlicer.bbs   |  2 +-
 4 files changed, 87 insertions(+), 1 deletion(-)
 create mode 100644 packages/itk/bbs/boxes/bbDICOMDirReader.bbs
 create mode 100644 packages/itk/src/bbitkDICOMSeriesFileNames.xml

diff --git a/kernel/appli/bbfy/bbfy.cpp b/kernel/appli/bbfy/bbfy.cpp
index dce426a..0d78040 100644
--- a/kernel/appli/bbfy/bbfy.cpp
+++ b/kernel/appli/bbfy/bbfy.cpp
@@ -77,6 +77,7 @@ private:
   std::string mTemplateImplementation;
 
   std::vector<std::string> mInclude;
+  std::vector<std::string> mTypedef;
 
   std::string mUserConstructor;
   std::string mUserCopyConstructor;
@@ -326,6 +327,13 @@ void bbfy::ParseXML()
       bbtk::GetTextOrClear(BB.getChildNode("include",&j),val);
       mInclude.push_back(val);
     }
+  // Typedef
+  for (i=0,j=0; i<BB.nChildNode("typedef"); i++) 
+    {
+      std::string val;
+      bbtk::GetTextOrClear(BB.getChildNode("typedef",&j),val);
+      mTypedef.push_back(val);
+    }
   
   // Inputs
   for (i=0,j=0; i<BB.nChildNode("input"); i++) 
@@ -539,6 +547,10 @@ void bbfy::CreateHeader()
       mFile << "  typedef " <<mVtkParent <<" vtkParent;"<<std::endl;
       mFile << "  void bbDelete() { vtkParent::Delete(); }"<<std::endl;
     }
+  for (i=mTypedef.begin(); i!=mTypedef.end(); ++i) 
+    {
+      mFile << *i <<"\n";
+    }
 
   // Declare user constructor / copy cons /destr 
   mFile << "//=================================================================="<<std::endl;
@@ -725,6 +737,11 @@ void bbfy::CreateHeader()
   
   // Category
   mFile << "BBTK_CATEGORY(\""<<mCategory<< "\");\n"; 
+
+  for (i=mTypedef.begin(); i!=mTypedef.end(); ++i) 
+    {
+      mFile << *i <<"\n";
+    }
   
   // Inputs
   for (ioi=mInput.begin(); ioi!=mInput.end(); ++ioi) 
diff --git a/packages/itk/bbs/boxes/bbDICOMDirReader.bbs b/packages/itk/bbs/boxes/bbDICOMDirReader.bbs
new file mode 100644
index 0000000..674554b
--- /dev/null
+++ b/packages/itk/bbs/boxes/bbDICOMDirReader.bbs
@@ -0,0 +1,15 @@
+load itk
+
+define DICOMDirReader itk
+  description "Reads a series from a DICOM directory as a 3D itk image" 
+  author "laurent.guigues at creatis.insa-lyon.fr"
+  category "image;read/write;dicom"
+
+  new DICOMSeriesFileNames dicom
+  new ImageSeriesReader reader
+  
+  input In dicom.In "The input DICOM directory"
+  output Out reader.Out "The image read"
+
+  exec reader
+endefine
diff --git a/packages/itk/src/bbitkDICOMSeriesFileNames.xml b/packages/itk/src/bbitkDICOMSeriesFileNames.xml
new file mode 100644
index 0000000..739bcdc
--- /dev/null
+++ b/packages/itk/src/bbitkDICOMSeriesFileNames.xml
@@ -0,0 +1,54 @@
+<!--==========================================================================
+   STARTS THE DESCRIPTION OF THE BLACK BOX -->
+<blackbox name="DICOMSeriesFileNames">
+<!--=======================================================================-->
+
+  <!--========================================================================
+    THE BOX DOCUMENTATION -->
+  <author>laurent.guigues at creatis.insa-lyon.fr</author>
+  <description>Reads a DICOM directory and generates an ordered sequence of filenames based on the DICOM tags in the files. Files can be sorted based on image number, slice location, or patient position. The files in the specified directory are grouped by SeriesUID. The list of SeriesUIDs can be queried and the filenames for a specific series extracted.</description>
+  <category>read/write;image;dicom</category>
+  <!--=====================================================================-->
+
+  <!--========================================================================
+    #include directives to be put in the .h generated
+    There must be one tag per file to include
+    Here we include the standard header iostream.h -->
+  <include><PRE>itkDICOMSeriesFileNames.h</PRE></include>
+  <include><PRE>itkDICOMSeriesFileNames.h</PRE></include>
+  <!--=====================================================================-->
+
+  <!--========================================================================
+    INPUTS/OUTPUTS DECLARATION --> 
+  <!-- Declares an input with name 'In' -->
+  <input name="In" type="std::string" description="DICOM directory"/>
+  
+  <!-- Declares an output with name 'Out' -->
+  <typedef><PRE>typedef std::vector<std::string> OutputType;</PRE></typedef>
+  <output name="Out" type="OutputType" description="Vector of file names"/>
+  <!--=====================================================================-->
+
+  <!--========================================================================
+    THE PROCESSING METHOD BODY -->
+  <process><PRE>
+    itk::DICOMSeriesFileNames::Pointer names = 
+     itk::DICOMSeriesFileNames::New();
+    names->SetDirectory(bbGetInputIn()); 
+    bbSetOutputOut( names->GetFileNames() );
+  </PRE></process>
+  <!--=====================================================================-->
+
+  <!--========================================================================
+    CONSTRUCTORS / DESTRUCTORS (OPTIONAL) 
+  <constructor><PRE>
+  </PRE></constructor>    
+  <copyconstructor><PRE>
+  </PRE></copyconstructor>    
+  <destructor><PRE>
+  </PRE></destructor>    
+  <!--=====================================================================-->
+
+<!--=======================================================================-->
+<!-- END OF BLACK BOX DESCRIPTION -->
+</blackbox>
+<!--=======================================================================-->
diff --git a/packages/wxvtk/bbs/boxes/bbSimpleSlicer.bbs b/packages/wxvtk/bbs/boxes/bbSimpleSlicer.bbs
index d1a3235..60db96b 100644
--- a/packages/wxvtk/bbs/boxes/bbSimpleSlicer.bbs
+++ b/packages/wxvtk/bbs/boxes/bbSimpleSlicer.bbs
@@ -2,7 +2,7 @@ load std
 load wx
 load wxvtk 
 
-define SimpleSlicer
+define SimpleSlicer wxvtk
 
  description "Simple 2D viewer of a slice of a 3D image. The slice is controlled by a slider. See <a href='#DemoSimpleSlicer'>DemoSimpleSlicer.bbs</a>. Screenshot : <center><img src='DemoSimpleSlicer.png'></center>"
  author "laurent.guigues@creatis.insa-lyon.fr"
-- 
2.45.1