From 5a05b543778b62236f31fbb5e0db507e0e0c733d Mon Sep 17 00:00:00 2001
From: David Sarrut <david.sarrut@creatis.insa-lyon.fr>
Date: Tue, 14 Jan 2014 07:54:33 +0100
Subject: [PATCH] Copy macro files for log

---
 cluster_tools/gate_run_submit_cluster.sh | 13 +++++++++++--
 1 file changed, 11 insertions(+), 2 deletions(-)

diff --git a/cluster_tools/gate_run_submit_cluster.sh b/cluster_tools/gate_run_submit_cluster.sh
index 0248a1e..4df0be7 100755
--- a/cluster_tools/gate_run_submit_cluster.sh
+++ b/cluster_tools/gate_run_submit_cluster.sh
@@ -1,4 +1,4 @@
-#!/usr/bin/env bash 
+#!/usr/bin/env bash
 
 set -u
 SCRIPTNAME="$(basename "${0}")"
@@ -74,10 +74,19 @@ echo "njobs = ${NJOBS}" >> "${PARAMFILE}"
 echo "macro = ${MACROFILE}" >> "${PARAMFILE}"
 test -z "${PARAM}" || echo "param = ${PARAM}" >> "${PARAMFILE}"
 
+# Copy macros files (for log)
+mkdir ${OUTPUTDIR}/mac
+cp ${MACROFILE} ${OUTPUTDIR}/mac
+files=`grep "control/execute" ${MACROFILE} | cut -d " " -f 2`
+for i in $files
+do
+    cp $i ${OUTPUTDIR}/mac
+done
+
 while test $NJOBS -gt 0; do
 
     if test "${QSUB}" = "noqsub"
-    then 
+    then
         echo "Launching Gate log in ${OUTPUTDIR}/gate_${NJOBS}.log"
         PARAM=\"${PARAM}\" INDEX=${NJOBS} INDEXMAX=${NJOBSMAX} SCRIPTDIR=${SCRIPTDIR} OUTPUTDIR=${OUTPUTDIR}  RELEASEDIR=${RELEASEDIR} MACROFILE=${MACROFILE} MACRODIR=${MACRODIR} PBS_JOBID="local_${NJOBS}" bash "${JOBFILE}" > ${OUTPUTDIR}/gate_${NJOBS}.log &
     else
-- 
2.47.1