From 5d0dec8e4214bbb37d0229018ea26eab5ccabf0f Mon Sep 17 00:00:00 2001
From: Frederic Cervenansky <Frederic.Cervenansky@creatis.insa-lyon.fr>
Date: Thu, 5 May 2011 09:19:12 +0000
Subject: [PATCH] *** empty log message ***

---
 src/creaImageIOWxISimpleDlg.hpp | 96 +++++++++++++++------------------
 1 file changed, 44 insertions(+), 52 deletions(-)

diff --git a/src/creaImageIOWxISimpleDlg.hpp b/src/creaImageIOWxISimpleDlg.hpp
index 518ff93..2993b1e 100644
--- a/src/creaImageIOWxISimpleDlg.hpp
+++ b/src/creaImageIOWxISimpleDlg.hpp
@@ -10,9 +10,10 @@
 #include <itkDICOMSeriesFileNames.h>
 #include <itkNumericSeriesFileNames.h>
 #include <itkVectorImage.h>
-//#include "itkImageToVTKImageFilter.h"
+#include <itkMetaImageIO.h>
 #include <itkOrientedImage.h>
 #include <vtkImageReader2.h>
+#include <vtkMetaImageReader.h>
 #include <boost/filesystem/path.hpp>
 #include <boost/filesystem.hpp>
 #include <boost/utility.hpp>
@@ -323,60 +324,51 @@ namespace creaImageIO
 			{
 			    typename TImage::Pointer image = m_Iresults[0];
 			
-				 // Size and dims for Input Image
-				typedef itk::Size<4> iSize;
-				typedef const itk::Size<4>::SizeValueType iSizeVal;
-				iSize size = image->GetLargestPossibleRegion().GetSize();
-				iSizeVal *dims_size  = size.GetSize();
-
-				 // Output Type
-				 typedef itk::Image<unsigned char,3> ImageOutputType;  
-			     typedef itk::ImageSeriesWriter<TImage, ImageOutputType >  SeriesWriterType;
-		  
-				/* typedef itk::VectorImage<short, 3> VectorImageType;
-				 VectorImageType::Pointer vect = VectorImageType::New();
-				 vect.*/
-
-
-				 SeriesWriterType::Pointer seriesWriter = SeriesWriterType::New();
-				 seriesWriter->SetInput( image);
+				 if(image->GetImageDimension() == 4)
+				 {
+					 // size of fourth dimension 
+					 int dsize = image->GetLargestPossibleRegion().GetSize(3);
+					 // Output Type
+					 typedef itk::Image<unsigned char,3> ImageOutputType;  
+					 typedef itk::ImageSeriesWriter<TImage, ImageOutputType >  SeriesWriterType;
+					 typedef itk::MetaImageIO MetaImageType;
+					 MetaImageType::Pointer metaIO;
+					 SeriesWriterType::Pointer seriesWriter = SeriesWriterType::New();
 			
-				 // from JPR file to generate output files
-				 typedef itk::NumericSeriesFileNames NamesGeneratorType;
-				 NamesGeneratorType::Pointer namesGenerator = NamesGeneratorType::New();
-				 namesGenerator->SetStartIndex(0);
-				 namesGenerator->SetEndIndex(dims_size[3]-1);
-				 namesGenerator->SetIncrementIndex(1);
-				 std::string format = i_dir;
-			     format += "/image%03d.vtk";
-				 namesGenerator->SetSeriesFormat( format.c_str() );
-				 const std::vector<std::string> names = namesGenerator->GetFileNames();
-				 seriesWriter->SetFileNames( names );
-			
-				 try
-				{
-					seriesWriter->Update();
-					vtkImageReader2 *vReader = vtkImageReader2::New();
-					vReader->SetFilePrefix(".vtk");
-					std::vector<std::string>::const_iterator it = names.begin();
-//					for(unsigned int i = 0 ;i < dims_size[3]; i++)
-					for( ;it !=  names.end(); ++it)
+					 // from JPR file to generate output files
+					 typedef itk::NumericSeriesFileNames NamesGeneratorType;
+					 NamesGeneratorType::Pointer namesGenerator = NamesGeneratorType::New();
+					 namesGenerator->SetStartIndex(0);
+					 namesGenerator->SetEndIndex(dsize-1); 
+					 namesGenerator->SetIncrementIndex(1);
+					 std::string format = i_dir;
+					 format += "/image%03d.mhd";
+					 namesGenerator->SetSeriesFormat( format.c_str() );
+					
+					 const std::vector<std::string> names = namesGenerator->GetFileNames();
+					 seriesWriter->SetFileNames( names );
+					 seriesWriter->SetInput(image);
+		  			 seriesWriter->SetImageIO(metaIO);
+					 try
 					{
-						std::string name(*it);
-						vReader->SetFileName("d://temp2//image000.vtk");//name.c_str());
-						vReader->Update();
-						crea::VtkBasicSlicer(vReader->GetOutput());
-						m_Vresults.push_back(vReader->GetOutput());
+						seriesWriter->Update();
+						vtkMetaImageReader *vReader = vtkMetaImageReader::New();
+						std::vector<std::string>::const_iterator it = names.begin();
+						for( ;it !=  names.end(); ++it)
+						{
+							vReader->SetFileName((*it).c_str());
+							vReader->Update();
+							m_Vresults.push_back(vReader->GetOutput());
+						}
 					}
-				}
-				catch( itk::ExceptionObject & excp )
-				{
-					std::cerr << "Exception thrown while writing the series " << std::endl;
-					std::cerr << excp << std::endl;
-					//return EXIT_FAILURE;
-				}
-				
-		  }
+					catch( itk::ExceptionObject & excp )
+					{
+						std::cerr << "Exception thrown while writing the series " << std::endl;
+						std::cerr << excp << std::endl;
+						//return EXIT_FAILURE;
+					}
+				 }
+			  }
 
 	  }
 
-- 
2.47.1