From 8aa2e4515caf4f406ff56c961bd19e163cd8604b Mon Sep 17 00:00:00 2001
From: =?utf8?q?Leonardo=20Fl=C3=B3rez-Valencia?= <florez-l@javeriana.edu.co>
Date: Wed, 22 Nov 2017 09:18:28 -0500
Subject: [PATCH] ...

---
 appli/CTBronchi/Functions.h |  1 +
 appli/CTBronchi/Process.sh  | 12 ++++++------
 2 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/appli/CTBronchi/Functions.h b/appli/CTBronchi/Functions.h
index 2e9732c..b48162e 100644
--- a/appli/CTBronchi/Functions.h
+++ b/appli/CTBronchi/Functions.h
@@ -44,6 +44,7 @@ namespace CTBronchi
     typedef itk::ImageFileWriter< _TImage > _TWriter;
     typename _TWriter::Pointer writer = _TWriter::New( );
     writer->SetFileName( fname );
+    writer->UseCompressionOn( );
     writer->SetInput( image );
     double t = MeasureTime( writer );
     std::cout << "Wrote \"" << fname << "\" in " << t << " s" << std::endl;
diff --git a/appli/CTBronchi/Process.sh b/appli/CTBronchi/Process.sh
index 009829f..10df8d5 100755
--- a/appli/CTBronchi/Process.sh
+++ b/appli/CTBronchi/Process.sh
@@ -107,14 +107,14 @@ if [ -z "$input" ] || [ -z "$seed" ] ; then
 fi
 
 base_dir=`dirname $input | xargs realpath`
-base_name=$base_dir/`basename $input .mhd`
+base_name=$base_dir/`basename $input .mha`
 
-vesselness=$base_name"_vesselness.mhd"
-mori=$base_name"_mori.mhd"
+vesselness=$base_name"_vesselness.mha"
+mori=$base_name"_mori.mha"
 mori_signal=$base_name"_mori_signal.txt"
-labels=$base_name"_labels.mhd"
-fastrw=$base_name"_fastrw.mhd"
-slicerw=$base_name"_slicerw.mhd"
+labels=$base_name"_labels.mha"
+fastrw=$base_name"_fastrw.mha"
+slicerw=$base_name"_slicerw.mha"
 
 echo "************************************************"
 (>&2 echo "Processing $input... ")
-- 
2.45.1