From 9aa88343bc78102888b115497701171bb5b807db Mon Sep 17 00:00:00 2001 From: dsarrut Date: Fri, 27 May 2011 17:35:42 +0200 Subject: [PATCH] Add clitkBool to perform boolean operation --- segmentation/clitkBool.cxx | 45 ++++++++ segmentation/clitkBool.ggo | 14 +++ ...tkBooleanOperatorLabelImageGenericFilter.h | 80 ++++++++++++++ ...BooleanOperatorLabelImageGenericFilter.txx | 104 ++++++++++++++++++ 4 files changed, 243 insertions(+) create mode 100644 segmentation/clitkBool.cxx create mode 100644 segmentation/clitkBool.ggo create mode 100644 segmentation/clitkBooleanOperatorLabelImageGenericFilter.h create mode 100644 segmentation/clitkBooleanOperatorLabelImageGenericFilter.txx diff --git a/segmentation/clitkBool.cxx b/segmentation/clitkBool.cxx new file mode 100644 index 0000000..dbb313c --- /dev/null +++ b/segmentation/clitkBool.cxx @@ -0,0 +1,45 @@ +/*========================================================================= + Program: vv http://www.creatis.insa-lyon.fr/rio/vv + + Authors belong to: + - University of LYON http://www.universite-lyon.fr/ + - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr + - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the copyright notices for more information. + + It is distributed under dual licence + + - BSD See included LICENSE.txt file + - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html +======================================================================-====*/ + +// clitk +#include "clitkBool_ggo.h" +#include "clitkBooleanOperatorLabelImageGenericFilter.h" + +//-------------------------------------------------------------------- +int main(int argc, char * argv[]) +{ + + // Init command line + GGO(clitkBool, args_info); + CLITK_INIT; + + // Filter + typedef clitk::BooleanOperatorLabelImageGenericFilter FilterType; + FilterType::Pointer filter = FilterType::New(); + + filter->SetArgsInfo(args_info); + + try { + filter->Update(); + } catch(std::runtime_error e) { + std::cout << e.what() << std::endl; + } + + return EXIT_SUCCESS; +} // This is the end, my friend +//-------------------------------------------------------------------- diff --git a/segmentation/clitkBool.ggo b/segmentation/clitkBool.ggo new file mode 100644 index 0000000..ede9646 --- /dev/null +++ b/segmentation/clitkBool.ggo @@ -0,0 +1,14 @@ +#File clitkExtractMediastinalVessels.ggo +package "clitkExtractMediastinalVessels" +version "1.0" +purpose "Extract MediastinalVessels" + +option "config" - "Config file" string no +option "imagetypes" - "Display allowed image types" flag off +option "verbose" v "Verbose" flag off + +option "input" i "Input mask 1" string yes +option "input2" j "Input mask 2" string yes +option "output" o "Output filename" string yes + +option "type" t "Bool type : " int default="1" no diff --git a/segmentation/clitkBooleanOperatorLabelImageGenericFilter.h b/segmentation/clitkBooleanOperatorLabelImageGenericFilter.h new file mode 100644 index 0000000..acd69ff --- /dev/null +++ b/segmentation/clitkBooleanOperatorLabelImageGenericFilter.h @@ -0,0 +1,80 @@ +/*========================================================================= + Program: vv http://www.creatis.insa-lyon.fr/rio/vv + + Authors belong to: + - University of LYON http://www.universite-lyon.fr/ + - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr + - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the copyright notices for more information. + + It is distributed under dual licence + + - BSD See included LICENSE.txt file + - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html +======================================================================-====*/ + +#ifndef CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_H +#define CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_H + +#include "clitkIO.h" +#include "clitkImageToImageGenericFilter.h" +#include "clitkBooleanOperatorLabelImageFilter.h" + +//-------------------------------------------------------------------- +namespace clitk +{ + + template + class ITK_EXPORT BooleanOperatorLabelImageGenericFilter: + public ImageToImageGenericFilter > + { + + public: + //-------------------------------------------------------------------- + BooleanOperatorLabelImageGenericFilter(); + + //-------------------------------------------------------------------- + typedef ImageToImageGenericFilter > Superclass; + typedef BooleanOperatorLabelImageGenericFilter Self; + typedef itk::SmartPointer Pointer; + typedef itk::SmartPointer ConstPointer; + + //-------------------------------------------------------------------- + itkNewMacro(Self); + itkTypeMacro(BooleanOperatorLabelImageGenericFilter, LightObject); + + //-------------------------------------------------------------------- + // Options for the GenericFilter + void SetArgsInfo(const ArgsInfoType & a); + + //-------------------------------------------------------------------- + // Options for the Filter + template + void SetOptionsFromArgsInfoToFilter(FilterType * f) ; + + //-------------------------------------------------------------------- + // Main function called each time the filter is updated + template + void UpdateWithInputImageType(); + + protected: + template void InitializeImageType(); + ArgsInfoType mArgsInfo; + + private: + BooleanOperatorLabelImageGenericFilter(const Self&); //purposely not implemented + void operator=(const Self&); //purposely not implemented + + }; // end class + //-------------------------------------------------------------------- + +} // end namespace clitk + +#ifndef ITK_MANUAL_INSTANTIATION +#include "clitkBooleanOperatorLabelImageGenericFilter.txx" +#endif + +#endif // #define CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_H diff --git a/segmentation/clitkBooleanOperatorLabelImageGenericFilter.txx b/segmentation/clitkBooleanOperatorLabelImageGenericFilter.txx new file mode 100644 index 0000000..0c07b67 --- /dev/null +++ b/segmentation/clitkBooleanOperatorLabelImageGenericFilter.txx @@ -0,0 +1,104 @@ +/*========================================================================= + Program: vv http://www.creatis.insa-lyon.fr/rio/vv + + Authors belong to: + - University of LYON http://www.universite-lyon.fr/ + - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr + - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr + + This software is distributed WITHOUT ANY WARRANTY; without even + the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR + PURPOSE. See the copyright notices for more information. + + It is distributed under dual licence + + - BSD See included LICENSE.txt file + - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html + ======================================================================-====*/ + +#ifndef CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_TXX +#define CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_TXX + +#include "clitkImageCommon.h" + +//-------------------------------------------------------------------- +template +clitk::BooleanOperatorLabelImageGenericFilter::BooleanOperatorLabelImageGenericFilter(): + ImageToImageGenericFilter("BooleanOperatorLabelImage") +{ + // Default values + cmdline_parser_clitkBool_init(&mArgsInfo); + InitializeImageType<3>(); // Only for 3D images +} +//-------------------------------------------------------------------- + + +//-------------------------------------------------------------------- +template +template +void clitk::BooleanOperatorLabelImageGenericFilter::InitializeImageType() +{ + ADD_IMAGE_TYPE(Dim, uchar); // Can add float later +} +//-------------------------------------------------------------------- + + +//-------------------------------------------------------------------- +template +void clitk::BooleanOperatorLabelImageGenericFilter::SetArgsInfo(const ArgsInfoType & a) +{ + mArgsInfo=a; + SetIOVerbose(mArgsInfo.verbose_flag); + if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes(); + if (mArgsInfo.input_given) AddInputFilename(mArgsInfo.input_arg); + if (mArgsInfo.input2_given) AddInputFilename(mArgsInfo.input2_arg); +} +//-------------------------------------------------------------------- + + +//-------------------------------------------------------------------- +template +template +void +clitk::BooleanOperatorLabelImageGenericFilter:: +SetOptionsFromArgsInfoToFilter(FilterType * f) +{ + // Operation type + f->SetOperationType(typename FilterType::OperationTypeEnumeration(mArgsInfo.type_arg)); + + // Output filename + this->AddOutputFilename(mArgsInfo.output_arg); +} +//-------------------------------------------------------------------- + + +//-------------------------------------------------------------------- +// Update with the number of dimensions and the pixeltype +//-------------------------------------------------------------------- +template +template +void clitk::BooleanOperatorLabelImageGenericFilter::UpdateWithInputImageType() +{ + // Reading input + typename ImageType::Pointer input1 = this->template GetInput(0); + typename ImageType::Pointer input2 = this->template GetInput(1); + + // Create filter + typedef clitk::BooleanOperatorLabelImageFilter FilterType; + typename FilterType::Pointer filter = FilterType::New(); + + // Set global Options + filter->SetInput1(input1); + filter->SetInput2(input2); + SetOptionsFromArgsInfoToFilter(filter); + + // Go ! + filter->Update(); + + // Write/Save results + typename ImageType::Pointer output = filter->GetOutput(); + this->template SetNextOutput(output); +} +//-------------------------------------------------------------------- + +#endif //#define CLITKBOOLEANOPERATORLABELIMAGEGENERICFILTER_TXX -- 2.47.1