From b918abd539ab5d8d633a83cf1d5b8cfcf5cc5c09 Mon Sep 17 00:00:00 2001 From: jpr Date: Mon, 22 Aug 2005 10:12:45 +0000 Subject: [PATCH] Update web pages --- Doc/Website/CommandLine.html | 98 +++++++++++++++++---------- Doc/Website/Cvs.html | 18 ++++- Doc/Website/ImageParticularities.html | 9 +-- Doc/Website/News.html | 7 +- Doc/Website/Sidebar.html | 9 +-- Doc/Website/Support.html | 41 ++++++----- 6 files changed, 114 insertions(+), 68 deletions(-) diff --git a/Doc/Website/CommandLine.html b/Doc/Website/CommandLine.html index 381a1829..c1abf7a1 100644 --- a/Doc/Website/CommandLine.html +++ b/Doc/Website/CommandLine.html @@ -7,74 +7,98 @@

Command Line Utilities :

PrintFile +

PrintFile

-   Display the header of any kind of ACR-NEMA/PAPYRUS/DICOM File
-   usage: PrintFile filein=fileName [level=n] [noshadow] [noseq] [debug]
+   Displays the header of any kind of ACR-NEMA/PAPYRUS/DICOM File
+   usage: PrintFile filein=fileName [level=n] 
+                    [ { [noshadowseq] | [noshadow][noseq] } ] [debug] [usage]
           level = 0,1,2 : depending on the amount of details user wants to see
-          noshadow : user doesn't want to load Private groups (odd number)
-          noseq    : user doesn't want to load Sequences
-          debug    : user wants to run the program in 'debug mode'
+          noshadowseq: user doesn't want to load Private Sequences
+          noshadow   : user doesn't want to load Private groups (odd number)
+          noseq      : user doesn't want to load Sequences
+          debug      : user wants to run the program in 'debug mode'
+          usage      : user wants to display usage

Anonymize +

Anonymize

-   Anonymize a full gdcm-readable Dicom image
+   Anonymizes a full gdcm-readable Dicom image
           Warning : probably segfaults if pixels are not gdcm readable.
                     Use AnonymizeNoLoad instead.
-   usage: Anonymize filein=inputFileName fileout=anonymizedFileName [debug]
+   usage: Anonymize filein=inputFileName fileout=anonymizedFileName [debug][usage]
           debug    : user wants to run the program in 'debug mode'
-

+ usage : user wants to display usage + -

AnonymizeNoLoad +

AnonymizeNoLoad

 
-   Anonymize a gdcm-readable Dicom image even if pixels aren't gdcm readable
-          Warning : the file is overwritten; to preserve file integrity,
-                    use a copy.
-   usage: AnonymizeNoLoad filein=inputFileName fileout=outputFileName [debug]
-          debug    : user wants to run the program in 'debug mode'
+   Anonymizes a gdcm-readable Dicom image even if pixels aren't gdcm readable
+         Warning : Warning : the image is overwritten;
+                   to preserve its integrity, use a copy.
+   usage: AnonymizeNoLoad {filein=inputFileName|dirin=inputDirectoryName}
+                          [rubout=listOfPrivateElementsToRubOut]
+                          [ { [noshadowseq] | [noshadow][noseq] } ] [debug]
+          inputFileName : Name of the (single) file user wants to anonymize
+          inputDirectoryName : user wants to anonymize *all* the files
+                               within the (single Patient!) directory
+          listOfElementsToRubOut : group1-elem1,g2-e2,... (in hexa)
+                                   of extra Elements to rub out
+          noshadowseq: user doesn't want to load Private Sequences
+          noshadow   : user doesn't want to load Private groups (odd number)
+          noseq      : user doesn't want to load Sequences
+          debug      : user wants to run the program in 'debug mode'
+          usage      : user wants to display usage

ReWrite +

ReWrite

-   Re write a full gdcm-readable Dicom image (compressed Pixels are expanded)
+   Re writes a full gdcm-readable Dicom image (compressed Pixels are expanded)
                    (usefull when the file is not very straight).                  
    usage: ReWrite filein=inputFileName fileout=anonymizedFileName
-                   [mode=write mode] [noshadow] [noseq][debug]
-          mode = a (ACR), x (Explicit VR Dicom), r (RAW : only pixels)
-          noshadow : user doesn't want to load Private groups (odd number)
-          noseq    : user doesn't want to load Sequences
-          rgb      : user wants to transform LUT (if any) into RGB 
-          debug    : user wants to run the program in 'debug mode' 
+                  [mode=write mode] [rgb]
+                  [ { [noshadowseq] | [noshadow][noseq] } ] [debug] [usage]
+          write mode = a (ACR), x (Explicit VR Dicom), r (RAW : only pixels)
+          rgb        : user wants to transform LUT (if any) into RGB 
+          noshadowseq: user doesn't want to load Private Sequences
+          noshadow   : user doesn't want to load Private groups (odd number)
+          noseq      : user doesn't want to load Sequences
+          debug      : user wants to run the program in 'debug mode'
+          usage      : user wants to display usage

PrintDicomDir +

PrintDicomDir

-   Display the tree-like structure of a DICOMDIR File
-   usage: PrintDicomDir filein=fileName [detail=n] [level=n] [debug]
+   Displays the tree-like structure of a DICOMDIR File
+   usage: PrintDicomDir filein=fileName [detail=n] [level=n] [debug] [usage]
           detail = 1 : Patients, 2 : Studies, 3 : Series, 4 : Images
                    5 : Full Content
           level = 0,1,2 : depending on user (what he wants to see, when detail=5)
-           debug    : user wants to run the program in 'debug mode'
+          debug    : user wants to run the program in 'debug mode'
+          usage    : user wants to display usage

MakeDicomDir +

MakeDicomDir

    Explores recursively the given directory, makes the relevant DICOMDIR
           and writes it as 'NewDICOMDIR'
-   usage: MakeDicomDir dirname=rootDirectoryName [noshadow] [noseq] [debug]
-          noshadow : user doesn't want to load Private groups (odd number)
-          noseq    : user doesn't want to load Sequences
-          debug    : user wants to run the program in 'debug mode'
+   usage: MakeDicomDir dirname=rootDirectoryName 
+                      [ { [noshadowseq] | [noshadow][noseq] } ] [debug] [usage]
+          noshadowseq: user doesn't want to load Private Sequence
+          noshadow   : user doesn't want to load Private groups (odd number)
+          noseq      : user doesn't want to load Sequences
+          debug      : user wants to run the program in 'debug mode'
+          usage      : user wants to display usage

AnonymizeDicomDir +

AnonymizeDicomDir

-   Anonymize a gdcm-readable DICOMDIR even when some 'Objects'
+   Anonymizes a gdcm-readable DICOMDIR even when some 'Objects'
           are not yet taken into account
-          Warning : the DICOMDIR is overwritten
-   usage: AnonymizeDicomDir filein=dicomDirName [debug]
+          Warning : the DICOMDIR is overwritten; 
+                    to preserve its integrity, use a copy.
+   usage: AnonymizeDicomDir filein=dicomDirName [debug] [usage] [usage]
           debug    : user wants to run the program in 'debug mode'
+          usage    : user wants to display usage

diff --git a/Doc/Website/Cvs.html b/Doc/Website/Cvs.html index bb3b7849..b97926a7 100644 --- a/Doc/Website/Cvs.html +++ b/Doc/Website/Cvs.html @@ -16,7 +16,23 @@ To learn more about CVS and to get the CVS programs, please refer to the CVS Home.

GENERAL +
WARNING +
+
General
- Repository server: :pserver:anonymous@cvs.creatis.insa-lyon.fr:2402/cvs/public
- Password is anonymous diff --git a/Doc/Website/ImageParticularities.html b/Doc/Website/ImageParticularities.html index df563f22..4d714054 100644 --- a/Doc/Website/ImageParticularities.html +++ b/Doc/Website/ImageParticularities.html @@ -55,6 +55,7 @@ About Physical Implementation (Only the images holding unusual characteristics a ============================= BIG-ENDIAN +---------- LIBIDO-16-ACR_NEMA-Volume.dcm pixelType=16U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=gdcm::Unfound TransferSyntaxName= [Uncompressed ACR-NEMA] SwapCode = 4321 US-RGB-8-epicard.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=1 Photom.Interp.=RGB TransferSyntaxName= [Explicit VR - Big Endian] SwapCode = 4321 @@ -62,7 +63,6 @@ BITS-ALLOCATED=12 ----------------- MR-MONO2-12-angio-an1.acr pixelType=16U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=gdcm::Unfound TransferSyntaxName= [Uncompressed ACR-NEMA] - BITS-ALLOCATED=24 ----------------- LIBIDO-24-ACR_NEMA-Rectangle.dcm pixelType=8U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=gdcm::Unfound TransferSyntaxName= [Uncompressed ACR-NEMA] @@ -72,7 +72,6 @@ SIGNED PIXELS ------------- MR-MONO2-16-head.dcm pixelType=16S Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [Implicit VR - Little Endian] CT-MONO2-16-chest.dcm pixelType=16S Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [JPEG Lossless, Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1])] -toto.dcm pixelType=16S Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [Explicit VR - Little Endian] PICKER-16-MONO2-No_DicomV3_Preamble.dcm pixelType=16S Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [Implicit VR - Little Endian] D_CLUNIE_MR1_JPLL.dcm pixelType=16S Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [JPEG Lossless, Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1])] CT-MONO2-16-ankle.dcm pixelType=16S Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [Implicit VR - Little Endian] @@ -159,7 +158,6 @@ RGB --- LEADTOOLS_FLOWERS-24-RGB-Uncompressed.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [Explicit VR - Little Endian] DermaColorLossLess.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [JPEG Lossless, Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1])] -toto.dcm pixelType=16S Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [Explicit VR - Little Endian] US-RGB-8-esopecho.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [Explicit VR - Little Endian] D_CLUNIE_VL2_RLE.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [RLE Lossless] SIEMENS-MR-RGB-16Bits.dcm pixelType=16U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [Explicit VR - Little Endian] @@ -173,12 +171,10 @@ D_CLUNIE_VL6_RLE.dcm pixelType=8U Smpl. GE_LOGIQBook-8-RGB-HugePreview.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [Explicit VR - Little Endian] LEADTOOLS_FLOWERS-24-RGB-JpegLossy.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [JPEG Baseline (Process 1)] - YBR_FULL_422 ------------ US-GE-4AICL142.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=YBR_FULL_422 TransferSyntaxName= [JPEG Baseline (Process 1)] - YBR_FULL -------- ACUSON-24-YBR_FULL-RLE.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=1 Photom.Interp.=YBR_FULL TransferSyntaxName= [RLE Lossless] @@ -244,14 +240,12 @@ D_CLUNIE_MR4_RLE.dcm pixelType=16U Smpl. D_CLUNIE_RG1_RLE.dcm pixelType=16U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME1 TransferSyntaxName= [RLE Lossless] D_CLUNIE_RG3_RLE.dcm pixelType=16U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME1 TransferSyntaxName= [RLE Lossless] - JPEG Baseline (Process 1) ------------------------- LEADTOOLS_FLOWERS-8-MONO2-JpegLossy.dcm pixelType=8U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [JPEG Baseline (Process 1)] US-GE-4AICL142.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=YBR_FULL_422 TransferSyntaxName= [JPEG Baseline (Process 1)] LEADTOOLS_FLOWERS-24-RGB-JpegLossy.dcm pixelType=8U Smpl.P.Pix.=3 Plan.Config.=0 Photom.Interp.=RGB TransferSyntaxName= [JPEG Baseline (Process 1)] - JPEG Extended (Process 2 & 4) ---------------------------- D_CLUNIE_NM1_JPLY.dcm pixelType=16U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [JPEG Extended (Process 2 & 4)] @@ -267,7 +261,6 @@ D_CLUNIE_MR3_JPLY.dcm pixelType=16U Smpl. D_CLUNIE_MR1_JPLY.dcm pixelType=16U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [JPEG Extended (Process 2 & 4)] D_CLUNIE_MR2_JPLY.dcm pixelType=16U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [JPEG Extended (Process 2 & 4)] - JPEG Lossless, Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1]) ---------------------------------------------------------------------------------------- RadBWLossLess.dcm pixelType=16U Smpl.P.Pix.=1 Plan.Config.=0 Photom.Interp.=MONOCHROME2 TransferSyntaxName= [JPEG Lossless, Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1])] diff --git a/Doc/Website/News.html b/Doc/Website/News.html index 03dfacac..461c05d8 100644 --- a/Doc/Website/News.html +++ b/Doc/Website/News.html @@ -126,9 +126,14 @@ Any contribution is welcome.
  - AnonymizeNoLoad used with dirin=inputDirectoryName anonymizes all the files within the given Directory. +
    + User may also choose extra elements he wants to rub out:
    + rubout=listOfElementsToRubOut
    + with listOfElementsToRubOut : group1-elem1,group2-elem2, + ... (in hexa, no space within the list )
  - gdcm::SerieHelper() has a new method - void AddGdcmFile(File *header), that allow aware user to + void AddGdcmFile(File *header), that allows aware user to create a 'FileList' (actually a std::vector< File* > ).
    The FileList created this way will be the diff --git a/Doc/Website/Sidebar.html b/Doc/Website/Sidebar.html index 28c27a16..74418d3f 100644 --- a/Doc/Website/Sidebar.html +++ b/Doc/Website/Sidebar.html @@ -29,7 +29,7 @@ News - Updated 2005.07.19 + Updated 2005.08.20 @@ -130,19 +130,20 @@ - web cvs access + Web CVS access - cvs access + CVS access - Online browsing of source code + Online browsing of source code
    + For CREATIS internal use only diff --git a/Doc/Website/Support.html b/Doc/Website/Support.html index 0f689df9..a7423d2f 100644 --- a/Doc/Website/Support.html +++ b/Doc/Website/Support.html @@ -12,34 +12,41 @@
    Gdcm is hosted at CREATIS) -
    
    +
    
    The historical developpers are (alphabetical order)
    - Eric Boix (Creatis) -
    - Leonardo Florez (Creatis/Theralys) -
    - Emmanuel Olart (Theralys) +
```
+              Eric Boix    (Creatis)
+          Leonardo Florez  (Creatis/Theralys)
+          Emmanuel Olart   (Theralys)
+
```
    The current developpers are (alphabetical order)
    - Mathieu Malaterre (Kitware) -
    - Benoit Regrain (Creatis) -
    - Jean-Pierre Roux (Creatis) +
```
+           Mathieu Malaterre (Kitware)
+            Benoit Regrain   (Creatis)
+       Jean-Pierre Roux      (Creatis)
+
```
    The contributors are (alphabetical order)
    - Fabrice Bellet -
    - Hugues Benoit-Cattin -
    - Peter Cech -
    - Edouardo Davila -
    - Dennis Hu -
    - Luis Ibanez -
    - Michal Kurgan -
    - Johan Montagnat -
    - Luca Picello -
    - Jean-Michel Rouet +
```
+              Aris Basic
+           Fabrice Bellet
+            Hugues Benoit-Cattin
+             Peter Cech
+          Edouardo Davila
+            Dennis Hu
+              Luis Ibanez
+            Michal Kurgan
+             Johan Montagnat
+              Luca Picello
+       Jean-Michel Rouet
+
```
    -- 2.45.1