From cbd6b587bc107b6e6ddf2eec71688e3125d0cd5a Mon Sep 17 00:00:00 2001 From: Eduardo DAVILA Date: Wed, 28 Oct 2020 17:06:05 +0100 Subject: [PATCH] MetaImageWriter Block --- .../vtk/src/bbvtkExtractVtkImageFilter.cxx | 2 +- packages/vtk/src/bbvtkMetaImageWriter.cxx | 187 ++++++++++++++++++ packages/vtk/src/bbvtkMetaImageWriter.h | 59 ++++++ packages/vtk/src/bbvtkMetaImageWriter.xml | 67 ------- 4 files changed, 247 insertions(+), 68 deletions(-) create mode 100644 packages/vtk/src/bbvtkMetaImageWriter.cxx create mode 100644 packages/vtk/src/bbvtkMetaImageWriter.h delete mode 100644 packages/vtk/src/bbvtkMetaImageWriter.xml diff --git a/packages/vtk/src/bbvtkExtractVtkImageFilter.cxx b/packages/vtk/src/bbvtkExtractVtkImageFilter.cxx index 2193423..30ca25a 100644 --- a/packages/vtk/src/bbvtkExtractVtkImageFilter.cxx +++ b/packages/vtk/src/bbvtkExtractVtkImageFilter.cxx @@ -88,7 +88,7 @@ void ExtractVtkImageFilter::bbUserSetDefaultValues() bbSetInputIndex(tmpIndex); bbSetInputSize(tmpSize); - bbSetOutputOut(0); + bbSetOutputOut(NULL); } //===== diff --git a/packages/vtk/src/bbvtkMetaImageWriter.cxx b/packages/vtk/src/bbvtkMetaImageWriter.cxx new file mode 100644 index 0000000..3be4743 --- /dev/null +++ b/packages/vtk/src/bbvtkMetaImageWriter.cxx @@ -0,0 +1,187 @@ +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +#include "bbvtkMetaImageWriter.h" +#include "bbvtkPackage.h" + +#include +#include + +namespace bbvtk +{ + +BBTK_ADD_BLACK_BOX_TO_PACKAGE(vtk,MetaImageWriter) +BBTK_BLACK_BOX_IMPLEMENTATION(MetaImageWriter,bbtk::AtomicBlackBox); + + + +void MetaImageWriter::Save_mhdb( std::string filename , vtkImageData* img ,int sizeB) +{ + int i,j,k; + int ext[6]; + int dim[3]; + img->GetExtent(ext); + dim[0]=ext[1]-ext[0]+1; + dim[1]=ext[3]-ext[2]+1; + dim[2]=ext[5]-ext[4]+1; + + int bsx=ceil((double)dim[0]/(double)sizeB); + int bsy=ceil((double)dim[1]/(double)sizeB); + int bsz=ceil((double)dim[2]/(double)sizeB); + + printf("EED MetaImageWriter::Save_mhdb bsx bsy bsz = %d %d %d\n", bsx,bsy,bsz); + printf("EED MetaImageWriter::Save_mhdb dim = %d %d %d\n", dim[0],dim[1],dim[2] ); + + int voi[6]; + std::string filenameBlock; + + for (i=0;i=dim[0]) { voi[1]=dim[0]-1; } + if (voi[3]>=dim[1]) { voi[3]=dim[1]-1; } + if (voi[5]>=dim[2]) { voi[5]=dim[2]-1; } + + vtkExtractVOI *extract = vtkExtractVOI::New(); + extract->SetInputData( img ); + extract->SetVOI(voi); + extract->UpdateWholeExtent(); + extract->Modified(); + extract->Update(); + + vtkMetaImageWriter* w = vtkMetaImageWriter::New(); + w->SetInputData( extract->GetOutput() ); + w->SetCompression(true); + w->SetFileDimensionality(bbGetInputIn()->GetDataDimension()); // NTU + filenameBlock=filename+"/a-"+ std::to_string(i)+"-"+ std::to_string(j)+"-"+ std::to_string(k)+".mhd"; +printf("EED MetaImageWriter::Save_mhdb name = %s \n", filenameBlock.c_str() ); + w->SetFileName( filenameBlock.c_str() ); +// w->Write(); + + w->Delete(); + extract->Delete(); + } // for k + } // for j + } // for i + + +} + + + +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void MetaImageWriter::Process() +{ + +// THE MAIN PROCESSING METHOD BODY +// Here we simply set the input 'In' value to the output 'Out' +// And print out the output value +// INPUT/OUTPUT ACCESSORS ARE OF THE FORM : +// void bbSet{Input|Output}NAME(const TYPE&) +// const TYPE& bbGet{Input|Output}NAME() const +// Where : +// * NAME is the name of the input/output +// (the one provided in the attribute 'name' of the tag 'input') +// * TYPE is the C++ type of the input/output +// (the one provided in the attribute 'type' of the tag 'input') + + +//EED 2017-01-01 Migration VTK7 +#if VTK_MAJOR_VERSION <= 5 + bbGetInputIn()->Update(); +#else + // ... +#endif + + std::string userGivenName = bbGetInputFilename(); + if (bbGetInputIn()!=NULL) + { + if (userGivenName.substr(userGivenName.size()-5) == ".mhdb") + { + printf("EED vtkMetaImageWriter process block..ups\n"); + + Save_mhdb( userGivenName , bbGetInputIn() , 20 ); + + } else { + if (userGivenName.substr(userGivenName.size()-4) != ".mhd") //JPR + { + userGivenName += ".mhd"; + } + vtkMetaImageWriter* w = vtkMetaImageWriter::New(); + //EED 2017-01-01 Migration VTK7 + #if VTK_MAJOR_VERSION <= 5 + w->SetInput(bbGetInputIn()); + #else + w->SetInputData(bbGetInputIn()); + #endif + w->SetCompression(bbGetInputCompression()); + w->SetFileDimensionality(bbGetInputIn()->GetDataDimension()); // NTU + w->SetFileName(userGivenName.c_str()); + //w->SetFileName(bbGetInputFilename().c_str()); // JPR + w->Write(); + w->Delete(); + } // .mhdb + } // bbGetInputIn()!=NULL + + +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void MetaImageWriter::bbUserSetDefaultValues() +{ + +// SET HERE THE DEFAULT INPUT/OUTPUT VALUES OF YOUR BOX +// Here we initialize the input 'In' to 0 + bbSetInputCompression(false); + +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void MetaImageWriter::bbUserInitializeProcessing() +{ + +// THE INITIALIZATION METHOD BODY : +// Here does nothing +// but this is where you should allocate the internal/output pointers +// if any + + +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void MetaImageWriter::bbUserFinalizeProcessing() +{ + +// THE FINALIZATION METHOD BODY : +// Here does nothing +// but this is where you should desallocate the internal/output pointers +// if any + +} +} +// EO namespace bbvtk + + diff --git a/packages/vtk/src/bbvtkMetaImageWriter.h b/packages/vtk/src/bbvtkMetaImageWriter.h new file mode 100644 index 0000000..37ec801 --- /dev/null +++ b/packages/vtk/src/bbvtkMetaImageWriter.h @@ -0,0 +1,59 @@ +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +#ifndef __bbvtkMetaImageWriter_h_INCLUDED__ +#define __bbvtkMetaImageWriter_h_INCLUDED__ + +#include "bbvtk_EXPORT.h" +#include "bbtkAtomicBlackBox.h" +#include "iostream" + +#include + + +namespace bbvtk +{ + +class bbvtk_EXPORT MetaImageWriter + : + public bbtk::AtomicBlackBox +{ + BBTK_BLACK_BOX_INTERFACE(MetaImageWriter,bbtk::AtomicBlackBox); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== + BBTK_DECLARE_INPUT(In,vtkImageData*); + BBTK_DECLARE_INPUT(Filename,std::string); + BBTK_DECLARE_INPUT(Compression,bool); +// BBTK_DECLARE_OUTPUT(Out,double); + BBTK_PROCESS(Process); + void Process(); + +void Save_mhdb( std::string filename , vtkImageData* img , int sizeB); + +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +}; + +BBTK_BEGIN_DESCRIBE_BLACK_BOX(MetaImageWriter,bbtk::AtomicBlackBox); + BBTK_NAME("MetaImageWriter"); + BBTK_AUTHOR("InfoDev"); + BBTK_DESCRIPTION("No Description."); + BBTK_CATEGORY("empty"); + + BBTK_INPUT(MetaImageWriter,In,"Input image",vtkImageData*,""); + BBTK_INPUT(MetaImageWriter,Filename,"Name of the file to write",std::string,"file name"); + BBTK_INPUT(MetaImageWriter,Compression,"default(false) true/false",bool,""); + + //BBTK_OUTPUT(MetaImageWriter,Out,"First output",double,""); + +BBTK_END_DESCRIBE_BLACK_BOX(MetaImageWriter); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +} +// EO namespace bbvtk + +#endif // __bbvtkMetaImageWriter_h_INCLUDED__ + diff --git a/packages/vtk/src/bbvtkMetaImageWriter.xml b/packages/vtk/src/bbvtkMetaImageWriter.xml deleted file mode 100644 index 7093390..0000000 --- a/packages/vtk/src/bbvtkMetaImageWriter.xml +++ /dev/null @@ -1,67 +0,0 @@ - - - - -laurent.guigues at creatis.insa-lyon.fr -
Writes .mhd / .mhd image formats (bbfication of vtkMetaImageWriter)
 -image;read/write - -vtkMetaImageWriter.h -vtkImageData.h - -vtkMetaImageWriter - - - - - - 
-
-
-
-//EED 2017-01-01 Migration VTK7
-#if VTK_MAJOR_VERSION <= 5
-   bbGetInputIn()->Update();
-#else
-	// ...
-#endif
-
-
-	std::string userGivenName = bbGetInputFilename();
-	if (bbGetInputIn()!=NULL)
-  	{
-		if (userGivenName.substr(userGivenName.size()-5) == ".mhdb")  
-		{ 
-			printf("EED vtkMetaImageWriter process  block..\n");
-		} else {
-				if (userGivenName.substr(userGivenName.size()-4) != ".mhd")  //JPR
-				{ 
-					userGivenName += ".mhd";
-				}
-			   vtkMetaImageWriter* w = vtkMetaImageWriter::New();
-	//EED 2017-01-01 Migration VTK7
-	#if VTK_MAJOR_VERSION <= 5
-				 w->SetInput(bbGetInputIn());
-	#else
-				 w->SetInputData(bbGetInputIn());
-	#endif
-				 w->SetCompression(bbGetInputCompression());  
-				 w->SetFileDimensionality(bbGetInputIn()->GetDataDimension()); 	// NTU
-				 w->SetFileName(userGivenName.c_str());  
-				 //w->SetFileName(bbGetInputFilename().c_str());  				// JPR
-				 w->Write();
-				 w->Delete();
-		} // .mhdb
-	} // bbGetInputIn()!=NULL
-
- - - 
-    bbSetInputCompression(false);
-
- - - - - - -- 2.45.1