From e44dcd3c16d60ca0d7d1eaf54abb8bbc4f9e48b0 Mon Sep 17 00:00:00 2001 From: tbaudier Date: Thu, 8 Feb 2018 15:49:57 +0100 Subject: [PATCH] Add -e output for qsub in gate_run_submit_cluster --- cluster_tools/gate_run_submit_cluster.sh | 7 ++++--- cluster_tools/gate_run_submit_cluster_nomove.sh | 6 +++--- 2 files changed, 7 insertions(+), 6 deletions(-) diff --git a/cluster_tools/gate_run_submit_cluster.sh b/cluster_tools/gate_run_submit_cluster.sh index 904a0d7..a74429a 100755 --- a/cluster_tools/gate_run_submit_cluster.sh +++ b/cluster_tools/gate_run_submit_cluster.sh @@ -113,14 +113,15 @@ while test $NJOBS -gt 0; do then PROJECTGROUP=creatis qsub -o "${OUTPUTDIR}" \ - -l sps=1 \ + -e "${OUTPUTDIR}" \ + -l sps=1 \ -N "gate.${RUNID}" \ -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \ "${JOBFILE}" || error "submission error" else qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \ - -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \ - "${JOBFILE}" || error "submission error" + -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \ + "${JOBFILE}" || error "submission error" fi let NJOBS-- diff --git a/cluster_tools/gate_run_submit_cluster_nomove.sh b/cluster_tools/gate_run_submit_cluster_nomove.sh index 47ad699..c3eb2f0 100755 --- a/cluster_tools/gate_run_submit_cluster_nomove.sh +++ b/cluster_tools/gate_run_submit_cluster_nomove.sh @@ -90,9 +90,9 @@ while test $NJOBS -gt 0; do echo "Launching Gate log in ${OUTPUTDIR}/gate_${NJOBS}.log" PARAM=\"${PARAM}\" INDEX=${NJOBS} INDEXMAX=${NJOBSMAX} OUTPUTDIR=${OUTPUTDIR} RELEASEDIR=${RELEASEDIR} MACROFILE=${MACROFILE} MACRODIR=${MACRODIR} PBS_JOBID="local_${NJOBS}" bash "${JOBFILE}" > ${OUTPUTDIR}/gate_${NJOBS}.log & else - qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \ - -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \ - "${JOBFILE}" || error "submission error" + qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" -e "${OUTPUTDIR}" \ + -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \ + "${JOBFILE}" || error "submission error" fi let NJOBS-- -- 2.46.0