From 974e68c27d558e59ff4c6454ba10f7f1a6d9fa6a Mon Sep 17 00:00:00 2001
From: Eduardo DAVILA <eduardo.davila@creatis.insa-lyon.fr>
Date: Sun, 19 Apr 2020 19:50:59 +0200
Subject: [PATCH] #3398 BBTK Bug New Normal  -  box SegmentationConnectivity
 Initialisation parameters

---
 .../vtk/src/bbvtkSegmentationConnectivity.cxx | 52 ++-----------------
 1 file changed, 4 insertions(+), 48 deletions(-)

diff --git a/packages/vtk/src/bbvtkSegmentationConnectivity.cxx b/packages/vtk/src/bbvtkSegmentationConnectivity.cxx
index a88876b..1f2758e 100644
--- a/packages/vtk/src/bbvtkSegmentationConnectivity.cxx
+++ b/packages/vtk/src/bbvtkSegmentationConnectivity.cxx
@@ -59,7 +59,6 @@ namespace bbvtk
 //	  cast2		= NULL;
 	  connect2	= NULL;
 	  cast4		= NULL;
-		
 	  bbSetInputIn(NULL);
 	  std::vector<int> position;
 	  position.push_back(0);
@@ -71,30 +70,24 @@ namespace bbvtk
 	  threshold.push_back(0);
 	  bbSetInputThresholdMinMax(threshold);
 	  bbSetOutputOut(NULL);
-
 	  bbSetInputOutputFormat("SAME");
 	  bbSetInputValue(255);
-
-
   }
 
-// --------------------------------------------------------------
-		
+// --------------------------------------------------------------	
 	void SegmentationConnectivity::bbUserInitializeProcessing()
 	{
-
 		thresh2 = vtkImageThreshold::New();
 		thresh2->SetInValue(255);
+		thresh2->SetOutValue(0);
 		thresh2->SetOutputScalarTypeToUnsignedChar();
 		connect2 = vtkImageSeedConnectivity::New();
-
 //EED 2017-01-01 Migration VTK7
 #if VTK_MAJOR_VERSION <= 5
 		connect2->SetInput(thresh2->GetOutput());
 #else
 		connect2->SetInputData(thresh2->GetOutput());
 #endif
-
 		connect2->SetInputConnectValue(255);
 		connect2->SetOutputConnectedValue( 255 );
 		connect2->SetOutputUnconnectedValue(0);
@@ -105,31 +98,9 @@ namespace bbvtk
 #else
 		cast4->SetInputData(connect2->GetOutput());
 #endif
-
-// EED 2016 06 15
-
-/*
-		thresh2 = vtkImageThreshold::New();
-			thresh2->SetInValue(255);
-			thresh2->SetOutputScalarTypeToUnsignedShort();
-			thresh2->SetOutValue(0);
-		cast2 = vtkImageCast::New();
-			cast2->SetInput(thresh2->GetOutput());
-			cast2->SetOutputScalarTypeToUnsignedChar();
-		connect2 = vtkImageSeedConnectivity::New();
-			connect2->SetInput(cast2->GetOutput());
-			connect2->SetInputConnectValue(255);
-			connect2->SetOutputConnectedValue(255);
-			connect2->SetOutputUnconnectedValue(0);
-		cast4 = vtkImageCast::New();
-			cast4->SetInput(connect2->GetOutput());
-			cast4->SetOutputScalarTypeToUnsignedShort();
-*/
-
 	}
 
-// --------------------------------------------------------------
-		
+// --------------------------------------------------------------		
   void SegmentationConnectivity::bbUserFinalizeProcessing() 
   { 
 	  if (thresh2!=NULL)
@@ -154,14 +125,9 @@ namespace bbvtk
 	  }  
   }
 
-
-
-
 // --------------------------------------------------------------
-		
   void SegmentationConnectivity::DoProcess()
   {
-	  
 	int x,y,z;
 	int i,numPoints = bbGetInputPositionXYZ().size()/3;
 	int verif = (bbGetInputPositionXYZ().size()-1) % 3;
@@ -176,29 +142,22 @@ namespace bbvtk
 		imagedata->Update();
 		thresh2->SetInput(imagedata);
 #else
-		imagedata->SetExtent(imagedata->GetExtent());
+//		imagedata->SetExtent(imagedata->GetExtent());
 		thresh2->SetInputData(imagedata);
 #endif
-
-		thresh2->ThresholdBetween(3000, 3001);
 		thresh2->ThresholdBetween(bbGetInputThresholdMinMax()[0], bbGetInputThresholdMinMax()[1]);
-		thresh2->Modified();
 		thresh2->Update();
 		connect2->RemoveAllSeeds ();
-
 		int ext[6];
-
 //EED 2017-01-01 Migration VTK7
 #if VTK_MAJOR_VERSION <= 5
 		imagedata->GetWholeExtent(ext);
 #else
 		imagedata->GetExtent(ext);
 #endif
-
 		int maxX = ext[1]-ext[0]+1;
 		int maxY = ext[3]-ext[2]+1;
 		int maxZ = ext[5]-ext[4]+1;
-
 		for (i=0;i<numPoints;i++)
 		{
 			x=bbGetInputPositionXYZ()[i*3+0];
@@ -210,7 +169,6 @@ namespace bbvtk
 			} else {
 				printf("EED WARNNIG! In box: SegmentationConnectivity points list out of range \n");
 			} // if point inside image 
-
 		} // for i
 		connect2->SetOutputConnectedValue( bbGetInputValue() );
 		cast4->SetOutputScalarType( outputformat );
@@ -222,9 +180,7 @@ namespace bbvtk
 		printf("EED WARNNIG! In box: SegmentationConnectivity List of points are not coherent. \n");
 		bbSetOutputOut( NULL );
 	}// if numPoints verif
-
 }
-
   
 }// EO namespace bbvtk
 
-- 
2.47.1