--- /dev/null
+function [z,e,REV,ESU,V,Z,SPUR] = amarma(y, Mode, MOP, UC, z0, Z0, V0, W);
+% Adaptive Mean-AutoRegressive-Moving-Average model estimation
+% [z,E,ESU,REV,V,Z,SPUR] = amarma(y, mode, MOP, UC, z0, Z0, V0, W);
+% Estimates AAR parameters with Kalman filter algorithm
+% y(t) = sum_i(a(i,t)*y(t-i)) + mu(t) + E(t)
+%
+% State space model:
+% z(t)=G*z(t-1) + w(t) w(t)=N(0,W)
+% y(t)=H*z(t) + v(t) v(t)=N(0,V)
+%
+% G = I,
+% z = [µ(t)/(1-sum_i(a(i,t))),a_1(t-1),..,a_p(t-p),b_1(t-1),...,b_q(t-q)];
+% H = [1,y(t-1),..,y(t-p),e(t-1),...,e(t-q)];
+% W = E{(z(t)-G*z(t-1))*(z(t)-G*z(t-1))'}
+% V = E{(y(t)-H*z(t-1))*(y(t)-H*z(t-1))'}
+%
+% Input:
+% y Signal (AR-Process)
+% Mode
+% [0,0] uses V0 and W
+%
+% MOP Model order [m,p,q], default [0,10,0]
+% m=1 includes the mean term, m=0 does not.
+% p and q must be positive integers
+% it is recommended to set q=0.
+% UC Update Coefficient, default 0
+% z0 Initial state vector
+% Z0 Initial Covariance matrix
+%
+% Output:
+% z AR-Parameter
+% E error process (Adaptively filtered process)
+% REV relative error variance MSE/MSY
+%
+%
+% see also: AAR
+%
+% REFERENCE(S):
+% [1] A. Schloegl (2000), The electroencephalogram and the adaptive autoregressive model: theory and applications.
+% ISBN 3-8265-7640-3 Shaker Verlag, Aachen, Germany.
+% [2] Schlögl A, Lee FY, Bischof H, Pfurtscheller G
+% Characterization of Four-Class Motor Imagery EEG Data for the BCI-Competition 2005.
+% Journal of neural engineering 2 (2005) 4, S. L14-L22
+%
+% More references can be found at
+% http://www.dpmi.tu-graz.ac.at/~schloegl/publications/
+
+% $Id: amarma.m 5376 2008-10-13 15:53:47Z schloegl $
+% Copyright (C) 1998-2002,2005,2006,2007,2008 by Alois Schloegl <a.schloegl@ieee.org>
+%
+% This program is free software: you can redistribute it and/or modify
+% it under the terms of the GNU General Public License as published by
+% the Free Software Foundation, either version 3 of the License, or
+% (at your option) any later version.
+%
+% This program is distributed in the hope that it will be useful,
+% but WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+% GNU General Public License for more details.
+%
+% You should have received a copy of the GNU General Public License
+% along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+
+[nc,nr]=size(y);
+
+if nargin<2 Mode=0;
+elseif isnan(Mode) return; end;
+if nargin<3, MOP=[0,10,0]; end;
+if nargin<8, W = nan ; end;
+if length(MOP)==0, m=0;p=10; q=0; MOP=p;
+elseif length(MOP)==1, m=0;p=MOP(1); q=0; MOP=p;
+elseif length(MOP)==2, fprintf(1,'Error AMARMA: MOP is ambiguos\n');
+elseif length(MOP)>2, m=MOP(1); p=MOP(2); q=MOP(3);MOP=m+p+q;
+end;
+
+if prod(size(Mode))>1
+ aMode=Mode(1);
+ eMode=Mode(2);
+end;
+%fprintf(1,['a' int2str(aMode) 'e' int2str(eMode) ' ']);
+
+
+e = zeros(nc,1);
+V = zeros(nc,1);V(1)=V0;
+T = zeros(nc,1);
+ESU = zeros(nc,1)+nan;
+SPUR = zeros(nc,1)+nan;
+z = z0(ones(nc,1),:);
+
+dW = UC/MOP*eye(MOP); % Schloegl
+
+%------------------------------------------------
+% First Iteration
+%------------------------------------------------
+
+H = zeros(MOP,1);
+if m,
+ %M0 = z0(1)/(1-sum(z0(2:p+1))); %transformierter Mittelwert
+ H(1) = 1;%M0;
+ %z0(1)= 1;
+end;
+
+Z = Z0;
+zt= z0;
+
+A1 = zeros(MOP); A2 = A1;
+
+%------------------------------------------------
+% Update Equations
+%------------------------------------------------
+
+for t=1:nc,
+ %H=[y(t-1); H(1:p-1); E ; H(p+1:MOP-1)]
+
+
+ if t<=p, H(m+(1:t-1)) = y(t-1:-1:1); %H(p)=mu0; % Autoregressive
+ else H(m+(1:p)) = y(t-1:-1:t-p); %mu0];
+ end;
+
+ if t<=q, H(m+p+(1:t-1)) = e(t-1:-1:1); % Moving Average
+ else H(m+p+(1:q)) = e(t-1:-1:t-q);
+ end;
+
+ % Prediction Error
+ E = y(t) - zt*H;
+
+ e(t) = E;
+
+ if ~isnan(E),
+ E2 = E*E;
+ AY = Z*H;
+
+% [zt, t, y(t), E,ESU(t),V(t),H,Z],pause,
+
+ ESU(t) = H'*AY;
+
+ if eMode==0
+ V(t) = V0;
+ elseif eMode==1
+ V0 = V(t-1);
+ V(t) = V0*(1-UC)+UC*E2;
+ elseif eMode==2
+ V0 = 1;
+ V(t) = V0; %V(t-1)*(1-UC)+UC*E2;
+ elseif eMode==3
+ V0 = 1-UC;
+ V(t) = V0; %(t-1)*(1-UC)+UC*E2;
+ elseif eMode==4
+ V0 = V0*(1-UC)+UC*E2;
+ V(t) = V0;
+ elseif eMode==5
+ V(t)=V0;
+ %V0 = V0;
+ elseif eMode==6
+ if E2>ESU(t)
+ V0=(1-UC)*V0+UC*(E2-ESU(t));
+ end;
+ V(t)=V0;
+ elseif eMode==7
+ V0=V(t);
+ if E2>ESU(t)
+ V(t) = (1-UC)*V0+UC*(E2-ESU(t));
+ else
+ V(t) = V0;
+ end;
+ elseif eMode==8
+ V0=0;
+ V(t) = V0; % (t-1)*(1-UC)+UC*E2;
+ end;
+
+%[t,size(H),size(Z)]
+
+ k = AY / (ESU(t) + V0); % Kalman Gain
+ zt = zt + k'*E;
+ %z(t,:) = zt;
+
+ if aMode==0
+ %W = W; %nop % Schloegl et al. 2003
+ elseif aMode==2
+ T(t)=(1-UC)*T(t-1)+UC*(E2-Q(t))/(H'*H); % Roberts I 1998
+ Z=Z*V(t-1)/Q(t);
+ if T(t)>0 W=T(t)*eye(MOP); else W=zeros(MOP);end;
+ elseif aMode==5
+ Q_wo = (H'*C*H + V(t-1)); % Roberts II 1998
+ T(t)=(1-UC)*T(t-1)+UC*(E2-Q_wo)/(H'*H);
+ if T(t)>0 W=T(t)*eye(MOP); else W=zeros(MOP); end;
+ elseif aMode==6
+ T(t)=(1-UC)*T(t-1)+UC*(E2-Q(t))/(H'*H);
+ Z=Z*V(t)/Q(t);
+ if T(t)>0 W=T(t)*eye(MOP); else W=zeros(MOP); end;
+ elseif aMode==11
+ %Z = Z - k*AY';
+ W = sum(diag(Z))*dW;
+ elseif aMode==12
+ W = UC*UC*eye(MOP);
+ elseif aMode==13
+ W = UC*diag(diag(Z));
+ elseif aMode==14
+ W = (UC*UC)*diag(diag(Z));
+ elseif aMode==15
+ W = sum(diag(Z))*dW;
+ elseif aMode==16
+ W = UC*eye(MOP); % Schloegl 1998
+ elseif aMode==17
+ Z = 0.5*(Z+Z');
+ W = UC*Z;
+ elseif aMode==18
+ W = 0.5*UC*(Z+Z');
+ %W=W;
+ end;
+
+ Z = Z - k*AY'; % Schloegl 1998
+ else
+
+ V(t) = V0;
+
+ end;
+ if any(any(isnan(W))), W=UC*Z; end;
+
+ z(t,:) = zt;
+ Z = Z + W; % Schloegl 1998
+ SPUR(t)=trace(Z);
+end;
+
+
+if 0,m,
+ z(:,1)=M0*z(:,1)./(1-sum(z(:,2:p),2));
+end;
+
+REV = mean(e.*e)/mean(y.*y);
+if any(~isfinite(Z(:))), REV=inf; end;
+