X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=CreaPhase.git;a=blobdiff_plain;f=octave_packages%2Fimage-1.0.15%2Fgraythresh.m;fp=octave_packages%2Fimage-1.0.15%2Fgraythresh.m;h=b680f2ab2a8d5e59f542ccda2a0ff9367e9dffc9;hp=0000000000000000000000000000000000000000;hb=f5f7a74bd8a4900f0b797da6783be80e11a68d86;hpb=1705066eceaaea976f010f669ce8e972f3734b05

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+## Copyright (C) 2005  Barre-Piquot
+##
+## This program is free software; you can redistribute it and/or
+## modify it under the terms of the GNU General Public License
+## as published by the Free Software Foundation; either version 2
+## of the License, or (at your option) any later version.
+##
+## This program is distributed in the hope that it will be useful,
+## but WITHOUT ANY WARRANTY; without even the implied warranty of
+## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+## GNU General Public License for more details.
+
+## -*- texinfo -*-
+## @deftypefn {Function File} {@var{level}=} graythresh (@var{I})
+## Compute global image threshold using Otsu's method.
+##
+## The output @var{level} is a global threshold (level) that can be used to convert
+## an intensity image to a binary image with @code{im2bw}.
+## @var{level} is a normalized intensity value that lies in the range [0, 1]. 
+## 
+## The function uses Otsu's method, which chooses the threshold to
+## minimize the intraclass variance of the black and white pixels. 
+## 
+## Color images are converted grayscale before @var{level} is computed.
+## @seealso{im2bw}
+## @end deftypefn
+
+## Note:
+## This function is taken from
+## http://www.irit.fr/recherches/SAMOVA/MEMBERS/JOLY/Homepage_files/IRR05/Barre-Piquot/graythresh.m
+## I added texinfo documentation, error checking and sanitised the code.
+##    -- Søren Hauberg
+
+function level = graythresh (I)
+    ## Input checking
+    if (nargin != 1)
+      print_usage();
+    endif
+    if (!isgray(I) && !isrgb(I))
+      error("graythresh: input must be an image");
+    endif
+    
+    ## If the image is RGB convert it to grayscale
+    if (isrgb(I))
+      I = rgb2gray(I);
+    endif
+
+    ## Calculation of the normalized histogram
+    n = 256;
+    h = hist(I(:), 1:n);        
+    h = h/(length(I(:))+1);
+    
+    ## Calculation of the cumulated histogram and the mean values
+    w = cumsum(h);
+    mu = zeros(n, 1); mu(1) = h(1);
+    for i=2:n
+        mu(i) = mu(i-1) + i*h(i);
+    end    
+         
+    ## Initialisation of the values used for the threshold calculation
+    level = find (h > 0, 1);
+    w0 = w(level);
+    w1 = 1-w0;
+    mu0 = mu(level)/w0;
+    mu1 = (mu(end)-mu(level))/w1;
+    max = w0*w1*(mu1-mu0)*(mu1-mu0);
+    
+    ## For each step of the histogram, calculation of the threshold and storing of the maximum
+    for i = find (h > 0)
+        w0 = w(i);
+        w1 = 1-w0;
+        mu0 = mu(i)/w0;
+        mu1 = (mu(end)-mu(i))/w1;
+        s = w0*w1*(mu1-mu0)*(mu1-mu0);
+        if (s > max)
+            max = s;
+            level = i;
+        endif
+    endfor
+    
+    ## Normalisation of the threshold        
+    level /= n;
+endfunction
+