X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=CreaPhase.git;a=blobdiff_plain;f=octave_packages%2Fm%2Fstatistics%2Ftests%2Fhotelling_test_2.m;fp=octave_packages%2Fm%2Fstatistics%2Ftests%2Fhotelling_test_2.m;h=e830145ce9fffcca298b0285511d1b2da0f42fb5;hp=0000000000000000000000000000000000000000;hb=1c0469ada9531828709108a4882a751d2816994a;hpb=63de9f36673d49121015e3695f2c336ea92bc278 diff --git a/octave_packages/m/statistics/tests/hotelling_test_2.m b/octave_packages/m/statistics/tests/hotelling_test_2.m new file mode 100644 index 0000000..e830145 --- /dev/null +++ b/octave_packages/m/statistics/tests/hotelling_test_2.m @@ -0,0 +1,86 @@ +## Copyright (C) 1996-2012 Kurt Hornik +## +## This file is part of Octave. +## +## Octave is free software; you can redistribute it and/or modify it +## under the terms of the GNU General Public License as published by +## the Free Software Foundation; either version 3 of the License, or (at +## your option) any later version. +## +## Octave is distributed in the hope that it will be useful, but +## WITHOUT ANY WARRANTY; without even the implied warranty of +## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +## General Public License for more details. +## +## You should have received a copy of the GNU General Public License +## along with Octave; see the file COPYING. If not, see +## . + +## -*- texinfo -*- +## @deftypefn {Function File} {[@var{pval}, @var{tsq}] =} hotelling_test_2 (@var{x}, @var{y}) +## For two samples @var{x} from multivariate normal distributions with +## the same number of variables (columns), unknown means and unknown +## equal covariance matrices, test the null hypothesis @code{mean +## (@var{x}) == mean (@var{y})}. +## +## Hotelling's two-sample @math{T^2} is returned in @var{tsq}. Under the null, +## @tex +## $$ +## {n_x+n_y-p-1) T^2 \over p(n_x+n_y-2)} +## $$ +## @end tex +## @ifnottex +## +## @example +## (n_x+n_y-p-1) T^2 / (p(n_x+n_y-2)) +## @end example +## +## @end ifnottex +## @noindent +## has an F distribution with @math{p} and @math{n_x+n_y-p-1} degrees of +## freedom, where @math{n_x} and @math{n_y} are the sample sizes and +## @math{p} is the number of variables. +## +## The p-value of the test is returned in @var{pval}. +## +## If no output argument is given, the p-value of the test is displayed. +## @end deftypefn + +## Author: KH +## Description: Compare means of two multivariate normals + +function [pval, Tsq] = hotelling_test_2 (x, y) + + if (nargin != 2) + print_usage (); + endif + + if (isvector (x)) + n_x = length (x); + if (! isvector (y)) + error ("hotelling_test_2: if X is a vector, Y must also be a vector"); + else + n_y = length (y); + p = 1; + endif + elseif (ismatrix (x)) + [n_x, p] = size (x); + [n_y, q] = size (y); + if (p != q) + error ("hotelling_test_2: X and Y must have the same number of columns"); + endif + else + error ("hotelling_test_2: X and Y must be matrices (or vectors)"); + endif + + d = mean (x) - mean (y); + S = ((n_x - 1) * cov (x) + (n_y - 1) * cov (y)) / (n_x + n_y - 2); + Tsq = (n_x * n_y / (n_x + n_y)) * d * (S \ d'); + pval = 1 - fcdf ((n_x + n_y - p - 1) * Tsq / (p * (n_x + n_y - 2)), + p, n_x + n_y - p - 1); + + if (nargout == 0) + printf (" pval: %g\n", pval); + endif + +endfunction