X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=CreaPhase.git;a=blobdiff_plain;f=octave_packages%2Fm%2Fstatistics%2Ftests%2Fkolmogorov_smirnov_test.m;fp=octave_packages%2Fm%2Fstatistics%2Ftests%2Fkolmogorov_smirnov_test.m;h=ff01503e1fb525227a84295bc48ba02262250c5d;hp=0000000000000000000000000000000000000000;hb=1c0469ada9531828709108a4882a751d2816994a;hpb=63de9f36673d49121015e3695f2c336ea92bc278 diff --git a/octave_packages/m/statistics/tests/kolmogorov_smirnov_test.m b/octave_packages/m/statistics/tests/kolmogorov_smirnov_test.m new file mode 100644 index 0000000..ff01503 --- /dev/null +++ b/octave_packages/m/statistics/tests/kolmogorov_smirnov_test.m @@ -0,0 +1,126 @@ +## Copyright (C) 1995-2012 Kurt Hornik +## +## This file is part of Octave. +## +## Octave is free software; you can redistribute it and/or modify it +## under the terms of the GNU General Public License as published by +## the Free Software Foundation; either version 3 of the License, or (at +## your option) any later version. +## +## Octave is distributed in the hope that it will be useful, but +## WITHOUT ANY WARRANTY; without even the implied warranty of +## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +## General Public License for more details. +## +## You should have received a copy of the GNU General Public License +## along with Octave; see the file COPYING. If not, see +## . + +## -*- texinfo -*- +## @deftypefn {Function File} {[@var{pval}, @var{ks}] =} kolmogorov_smirnov_test (@var{x}, @var{dist}, @var{params}, @var{alt}) +## Perform a Kolmogorov-Smirnov test of the null hypothesis that the +## sample @var{x} comes from the (continuous) distribution dist. I.e., +## if F and G are the CDFs corresponding to the sample and dist, +## respectively, then the null is that F == G. +## +## The optional argument @var{params} contains a list of parameters of +## @var{dist}. For example, to test whether a sample @var{x} comes from +## a uniform distribution on [2,4], use +## +## @example +## kolmogorov_smirnov_test(x, "unif", 2, 4) +## @end example +## +## @noindent +## @var{dist} can be any string for which a function @var{dist_cdf} +## that calculates the CDF of distribution @var{dist} exists. +## +## With the optional argument string @var{alt}, the alternative of +## interest can be selected. If @var{alt} is @code{"!="} or +## @code{"<>"}, the null is tested against the two-sided alternative F +## != G@. In this case, the test statistic @var{ks} follows a two-sided +## Kolmogorov-Smirnov distribution. If @var{alt} is @code{">"}, the +## one-sided alternative F > G is considered. Similarly for @code{"<"}, +## the one-sided alternative F > G is considered. In this case, the +## test statistic @var{ks} has a one-sided Kolmogorov-Smirnov +## distribution. The default is the two-sided case. +## +## The p-value of the test is returned in @var{pval}. +## +## If no output argument is given, the p-value is displayed. +## @end deftypefn + +## Author: KH +## Description: One-sample Kolmogorov-Smirnov test + +function [pval, ks] = kolmogorov_smirnov_test (x, dist, varargin) + + if (nargin < 2) + print_usage (); + endif + + if (! isvector (x)) + error ("kolmogorov_smirnov_test: X must be a vector"); + endif + + n = length (x); + s = sort (x); + try + f = str2func (sprintf ("%scdf", dist)); + catch + try + f = str2func (sprintf ("%s_cdf", dist)); + catch + error ("kolmogorov_smirnov_test: no %scdf or %s_cdf function found", + dist, dist); + end_try_catch + end_try_catch + + alt = "!="; + + args{1} = s; + nvargs = numel (varargin); + if (nvargs > 0) + if (ischar (varargin{end})) + alt = varargin{end}; + args(2:nvargs) = varargin(1:end-1); + else + args(2:nvargs+1) = varargin; + endif + endif + + z = reshape (feval (f, args{:}), 1, n); + + if (strcmp (alt, "!=") || strcmp (alt, "<>")) + ks = sqrt (n) * max (max ([abs(z - (0:(n-1))/n); abs(z - (1:n)/n)])); + pval = 1 - kolmogorov_smirnov_cdf (ks); + elseif (strcmp (alt, ">")) + ks = sqrt (n) * max (max ([z - (0:(n-1))/n; z - (1:n)/n])); + pval = exp (- 2 * ks^2); + elseif (strcmp (alt, "<")) + ks = - sqrt (n) * min (min ([z - (0:(n-1))/n; z - (1:n)/n])); + pval = exp (- 2 * ks^2); + else + error ("kolmogorov_smirnov_test: alternative %s not recognized", alt); + endif + + if (nargout == 0) + printf ("pval: %g\n", pval); + endif + +endfunction + +%!error +%! kolmogorov_smirnov_test (1); +%!error +%! kolmogorov_smirnov_test ({}, "unif", 2, 4); +%!error +%! kolmogorov_smirnov_test (1, "not_a_dist"); +%!error +%! kolmogorov_smirnov_test (1, "unif", 2, 4, "bla"); +%!test # for recognition of unifcdf function +%! assert (kolmogorov_smirnov_test (0:100, "unif", 0, 100), 1.0, eps); +%!test # for recognition of logistic_cdf function +%! assert (kolmogorov_smirnov_test (0:100, "logistic"), 0); +%!test # F < G +%! assert (kolmogorov_smirnov_test (50:100, "unif", 0, 50, "<"));