X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=CreaPhase.git;a=blobdiff_plain;f=octave_packages%2Fm%2Fstatistics%2Ftests%2Fwelch_test.m;fp=octave_packages%2Fm%2Fstatistics%2Ftests%2Fwelch_test.m;h=9627e0d95f28c60e375392ccb743ef8cd3bd67bd;hp=0000000000000000000000000000000000000000;hb=1c0469ada9531828709108a4882a751d2816994a;hpb=63de9f36673d49121015e3695f2c336ea92bc278 diff --git a/octave_packages/m/statistics/tests/welch_test.m b/octave_packages/m/statistics/tests/welch_test.m new file mode 100644 index 0000000..9627e0d --- /dev/null +++ b/octave_packages/m/statistics/tests/welch_test.m @@ -0,0 +1,85 @@ +## Copyright (C) 1995-2012 Kurt Hornik +## +## This file is part of Octave. +## +## Octave is free software; you can redistribute it and/or modify it +## under the terms of the GNU General Public License as published by +## the Free Software Foundation; either version 3 of the License, or (at +## your option) any later version. +## +## Octave is distributed in the hope that it will be useful, but +## WITHOUT ANY WARRANTY; without even the implied warranty of +## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +## General Public License for more details. +## +## You should have received a copy of the GNU General Public License +## along with Octave; see the file COPYING. If not, see +## . + +## -*- texinfo -*- +## @deftypefn {Function File} {[@var{pval}, @var{t}, @var{df}] =} welch_test (@var{x}, @var{y}, @var{alt}) +## For two samples @var{x} and @var{y} from normal distributions with +## unknown means and unknown and not necessarily equal variances, +## perform a Welch test of the null hypothesis of equal means. +## Under the null, the test statistic @var{t} approximately follows a +## Student distribution with @var{df} degrees of freedom. +## +## With the optional argument string @var{alt}, the alternative of +## interest can be selected. If @var{alt} is @code{"!="} or +## @code{"<>"}, the null is tested against the two-sided alternative +## @code{mean (@var{x}) != @var{m}}. If @var{alt} is @code{">"}, the +## one-sided alternative mean(x) > @var{m} is considered. Similarly for +## @code{"<"}, the one-sided alternative mean(x) < @var{m} is +## considered. The default is the two-sided case. +## +## The p-value of the test is returned in @var{pval}. +## +## If no output argument is given, the p-value of the test is displayed. +## @end deftypefn + +## Author: KH +## Description: Welch two-sample t test + +function [pval, t, df] = welch_test (x, y, alt) + + if ((nargin < 2) || (nargin > 3)) + print_usage (); + endif + + if (! (isvector (x) && isvector (y))) + error ("welch_test: both X and Y must be vectors"); + endif + + n_x = length (x); + n_y = length (y); + mu_x = sum (x) / n_x; + mu_y = sum (y) / n_y; + v_x = sumsq (x - mu_x) / (n_x * (n_x - 1)); + v_y = sumsq (y - mu_y) / (n_y * (n_y - 1)); + c = v_x / (v_x + v_y); + df = 1 / (c^2 / (n_x - 1) + (1 - c)^2 / (n_y - 1)); + t = (mu_x - mu_y) / sqrt (v_x + v_y); + cdf = tcdf (t, df); + + if (nargin == 2) + alt = "!="; + endif + + if (! ischar (alt)) + error ("welch_test: ALT must be a string"); + endif + if (strcmp (alt, "!=") || strcmp (alt, "<>")) + pval = 2 * min (cdf, 1 - cdf); + elseif (strcmp (alt, ">")) + pval = 1 - cdf; + elseif (strcmp (alt, "<")) + pval = cdf; + else + error ("welch_test: option %s not recognized", alt); + endif + + if (nargout == 0) + printf (" pval: %g\n", pval); + endif + +endfunction