X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=CreaPhase.git;a=blobdiff_plain;f=octave_packages%2Fsecs2d-0.0.8%2FQDDGOX%2FQDDGOXcompdens.m;fp=octave_packages%2Fsecs2d-0.0.8%2FQDDGOX%2FQDDGOXcompdens.m;h=7a4b8a270319da1e7d203a1d52903172b41c05d1;hp=0000000000000000000000000000000000000000;hb=c880e8788dfc484bf23ce13fa2787f2c6bca4863;hpb=1705066eceaaea976f010f669ce8e972f3734b05

diff --git a/octave_packages/secs2d-0.0.8/QDDGOX/QDDGOXcompdens.m b/octave_packages/secs2d-0.0.8/QDDGOX/QDDGOXcompdens.m
new file mode 100644
index 0000000..7a4b8a2
--- /dev/null
+++ b/octave_packages/secs2d-0.0.8/QDDGOX/QDDGOXcompdens.m
@@ -0,0 +1,173 @@
+function w = QDDGOXcompdens(mesh,Dsides,win,vin,fermiin,d2,toll,maxit,verbose);
+
+%  w = QDDGOXcompdens(mesh,Dsides,win,vin,fermiin,d2,toll,maxit,verbose);
+
+global QDDGOXCOMPDENS_LAP QDDGOXCOMPDENS_MASS QDDGOXCOMPDENS_RHS 
+%% Set some usefull constants
+VErank = 4;
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%% convert input vectors to columns
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+if Ucolumns(win)>Urows(win)
+    win=win';
+end
+if Ucolumns(vin)>Urows(vin)
+    vin=vin';
+end 
+if Ucolumns(fermiin)>Urows(fermiin)
+    fermiin=fermiin';
+end 
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%% convert grid info to FEM form
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+nodes 		    = mesh.p;
+Nnodes		    = size(nodes,2);
+
+elements	    = mesh.t(1:3,:);
+Nelements           = size(elements,2);
+
+Dedges    =[];
+
+for ii = 1:length(Dsides)
+	Dedges=[Dedges,find(mesh.e(5,:)==Dsides(ii))];
+end
+
+% Set list of nodes with Dirichelet BCs
+Dnodes = mesh.e(1:2,Dedges);
+Dnodes = [Dnodes(1,:) Dnodes(2,:)];
+Dnodes = unique(Dnodes);
+
+Dvals  = win(Dnodes);
+
+Varnodes = setdiff([1:Nnodes],Dnodes);
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%
+%% 		initialization:
+%% 		we're going to solve
+%% 		$$ -\delta^2 \Lap w_{k+1} + B'(w_k) \delta w_{k+1} =  2 * w_k$$
+%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+%% set $$ w_1 = win $$ 
+w = win;
+wnew = win;
+
+%% let's compute  FEM approximation of $$ L = - \aleph \frac{d^2}{x^2} $$
+if (isempty(QDDGOXCOMPDENS_LAP))
+    QDDGOXCOMPDENS_LAP = Ucomplap (mesh,ones(Nelements,1));
+end
+L = d2*QDDGOXCOMPDENS_LAP;
+
+%% now compute $$ G_k = F - V  + 2 V_{th} log(w) $$
+if (isempty(QDDGOXCOMPDENS_MASS))
+    QDDGOXCOMPDENS_MASS = Ucompmass2 (mesh,ones(Nnodes,1),ones(Nelements,1));
+end
+G	    = fermiin - vin  + 2*log(w);
+Bmat	= QDDGOXCOMPDENS_MASS*sparse(diag(G));
+nrm     = 1;
+%%%%%%%%%%%%%%%%%%%%%%%%
+%%% NEWTON ITERATION START
+%%%%%%%%%%%%%%%%%%%%%%%%
+converged = 0;
+for jnewt =1:ceil(maxit/VErank)
+  for k=1:VErank
+    [w(:,k+1),converged,G,L,Bmat]=onenewtit(w(:,k),G,fermiin,vin,L,Bmat,jnewt,mesh,Dnodes,Varnodes,Dvals,Nnodes,Nelements,toll);        
+    if converged
+      break
+    end
+  end
+  if converged
+    break
+  end
+  w  = Urrextrapolation(w);
+end	
+%%%%%%%%%%%%%%%%%%%%%%%%
+%%% NEWTON ITERATION END
+%%%%%%%%%%%%%%%%%%%%%%%%
+w = w(:,end);
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%% ONE NEWTON ITERATION
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+function [w,converged,G,L,Bmat]=onenewtit(w,G,fermiin,vin,L,Bmat,jnewt,mesh,Dnodes,Varnodes,Dvals,Nnodes,Nelements,toll);
+  
+  global QDDGOXCOMPDENS_LAP QDDGOXCOMPDENS_MASS QDDGOXCOMPDENS_RHS 
+  dampit 		= 5;
+  dampcoeff	        = 2;
+  converged             = 0;
+  wnew                  =  w;
+  
+  res0      = norm((L + Bmat) * w,inf);
+  
+  
+  %% chose $ t_k $ to ensure positivity of  $w$
+  mm  = -min(G);
+  pause(1)
+
+  if (mm>2)
+    tk = max( 1/(mm));
+  else
+    tk = 1;
+  end
+
+  tmpmat = QDDGOXCOMPDENS_MASS*2;
+  if (isempty(QDDGOXCOMPDENS_RHS))
+    QDDGOXCOMPDENS_RHS = Ucompconst (mesh,ones(Nnodes,1),ones(Nelements,1));
+  end
+  tmpvect= 2*QDDGOXCOMPDENS_RHS.*w;
+  
+  %%%%%%%%%%%%%%%%%%%%%%%%
+  %%% DAMPING ITERATION START
+  %%%%%%%%%%%%%%%%%%%%%%%%
+  for idamp = 1:dampit
+    %% Compute $ B1mat = \frac{2}{t_k} $
+    %% and the (lumped) mass matrix B1mat(w_k)
+    B1mat	= tmpmat/tk;
+    
+    %% now we're ready to build LHS matrix and RHS of the linear system for 1st Newton step
+    A 		= L + B1mat + Bmat;
+    b 		= tmpvect/tk;
+    
+    %% Apply boundary conditions
+    A (Dnodes,:) = 0;
+    b (Dnodes)   = 0;
+    b = b - A (:,Dnodes) * Dvals;
+    
+    A(Dnodes,:)= [];
+    A(:,Dnodes)= [];
+    
+    b(Dnodes)	= [];
+    
+
+    wnew(Varnodes) =  A\b;	
+    
+    
+    %% compute $$ G_{k+1} = F - V  + 2 V_{th} log(w) $$
+    G	    = fermiin - vin  + 2*log(wnew);
+    Bmat	= QDDGOXCOMPDENS_MASS*sparse(diag(G));
+    
+    res    = norm((L + Bmat) * wnew,inf);
+    
+    if (res<res0)
+      break
+    else
+      tk = tk/dampcoeff;
+    end
+  end	
+  %%%%%%%%%%%%%%%%%%%%%%%%
+  %%% DAMPING ITERATION END
+  %%%%%%%%%%%%%%%%%%%%%%%%
+  nrm = norm(wnew-w);
+  
+  if (nrm < toll)
+    w= wnew;
+    converged = 1;
+  else
+    w=wnew;
+  end
+  
+