X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=CreaPhase.git;a=blobdiff_plain;f=octave_packages%2Ftsa-4.2.4%2Facorf.m;fp=octave_packages%2Ftsa-4.2.4%2Facorf.m;h=7a11ca81fe81efbaa48ac9bdedcdc53ec0f13d38;hp=0000000000000000000000000000000000000000;hb=f5f7a74bd8a4900f0b797da6783be80e11a68d86;hpb=1705066eceaaea976f010f669ce8e972f3734b05

diff --git a/octave_packages/tsa-4.2.4/acorf.m b/octave_packages/tsa-4.2.4/acorf.m
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+function [AUTOCOV,stderr,lpq,qpval] = acorf(Z,N);
+%  Calculates autocorrelations for multiple data series.
+%  Missing values in Z (NaN) are considered. 
+%  Also calculates Ljung-Box Q stats and p-values.
+%
+%    [AutoCorr,stderr,lpq,qpval] = acorf(Z,N);
+%  If mean should be removed use
+%    [AutoCorr,stderr,lpq,qpval] = acorf(detrend(Z',0)',N);
+%  If trend should be removed use
+%    [AutoCorr,stderr,lpq,qpval] = acorf(detrend(Z')',N);
+%
+% INPUT
+%  Z	is data series for which autocorrelations are required
+%       each in a row
+%  N	maximum lag
+%
+% OUTPUT
+%  AutoCorr nr x N matrix of autocorrelations
+%  stderr   nr x N matrix of (approx) std errors
+%  lpq      nr x M matrix of Ljung-Box Q stats
+%  qpval    nr x N matrix of p-values on Q stats
+%   
+% All input and output parameters are organized in rows, one row 
+% corresponds to one series
+%
+% REFERENCES:
+%  S. Haykin "Adaptive Filter Theory" 3ed. Prentice Hall, 1996.
+%  M.B. Priestley "Spectral Analysis and Time Series" Academic Press, 1981. 
+%  W.S. Wei "Time Series Analysis" Addison Wesley, 1990.
+%  J.S. Bendat and A.G.Persol "Random Data: Analysis and Measurement procedures", Wiley, 1986.
+
+% calculating lpq, stderr, qpval from 
+% suggested by Philip Gray, University of New South Wales, 
+
+%       $Id: acorf.m 5090 2008-06-05 08:12:04Z schloegl $
+%       Copyright (C) 1998-2002,2008 by Alois Schloegl <a.schloegl@ieee.org>
+%
+%    This program is free software: you can redistribute it and/or modify
+%    it under the terms of the GNU General Public License as published by
+%    the Free Software Foundation, either version 3 of the License, or
+%    (at your option) any later version.
+%
+%    This program is distributed in the hope that it will be useful,
+%    but WITHOUT ANY WARRANTY; without even the implied warranty of
+%    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+%    GNU General Public License for more details.
+%
+%    You should have received a copy of the GNU General Public License
+%    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+
+[nr,nc] = size(Z);
+NC = sum(~isnan(Z),2); % missing values
+
+AUTOCOV = acovf(Z,N);
+AUTOCOV = AUTOCOV(:,2:N+1) ./ AUTOCOV(:,ones(1,N));
+
+if nargout > 1 
+        stderr = sqrt(1./NC)*ones(1,N);
+        lpq = zeros(nr,N);
+        qpval = zeros(nr,N);
+        
+        cum=zeros(nr,1);
+        for k=1:N,
+                cum = cum+AUTOCOV(:,k).*conj(AUTOCOV(:,k))./(NC-k);
+                lpq(:,k) = NC.*(NC+2).*cum;                 % Ljung box Q for k lags
+                %qpval(:,k) = 1 - chi2cdf(lpq(:,k),k);	% p-value of Q stat
+                qpval(:,k) = 1 - gammainc(lpq(:,k)/2,k/2);	% replace chi2cdf by gammainc
+        end;
+end;