#include <string>
#include "itkSTMS_ArgumentsAnalysis_Spine.h"


// --image image1.nii --xScale 15.2 --image image2.nii --yScale 16.3 --zScale 17.4 --rScale 10.6 --mask mask.nii --image image3.nii --outFolder outFolder/ --epsilon 0.1 --imageDimension 2 --maxIt 20
int main(int argc, char **argv)
{
    itkSTMS::itkSTMS_ArgumentsAnalysis* argsAnalysis = new itkSTMS::itkSTMS_ArgumentsAnalysis(argc, argv);
    argsAnalysis->Update();

    itkSTMS::ParamsAnalysisOutputType* params = argsAnalysis->GetSTMSParams();


    std::cout << "images:"<<std::endl;

    for (std::list<std::string>::iterator it =  params->images.begin(); it !=  params->images.end(); ++it)
    {
        std::cout<< *it << std::endl;
    }

    std::cout << std::endl << "x          :"<< params->spScales[0]   << std::endl<< std::endl;
    std::cout << std::endl << "y          :"<< params->spScales[1]   << std::endl<< std::endl;
    std::cout << std::endl << "z          :"<< params->spScales[2]   << std::endl<< std::endl;
    std::cout << std::endl << "r          :"<< params->rScale        << std::endl<< std::endl;
    std::cout << std::endl << "mask       :"<< params->mask          << std::endl<< std::endl;
    std::cout << std::endl << "outFolder  :"<< params->outFolder     << std::endl<< std::endl;
    std::cout << std::endl << "ntp        :"<< params->numTimePoints << std::endl<< std::endl;
    std::cout << std::endl << "eps        :"<< params->epsilon       << std::endl<< std::endl;
    std::cout << std::endl << "imDim      :"<< params->dim           << std::endl<< std::endl;
    std::cout << std::endl << "maxIt      :"<< params->maxIt         << std::endl<< std::endl;
    std::cout << std::endl << "merge      :"<< params->merge         << std::endl<< std::endl;

    std::cout << std::endl << "1st element:"<< *params->images.begin()<< std::endl<< std::endl;

    delete argsAnalysis;
    return EXIT_SUCCESS;
}