-/*=========================================================================
+/*
+ # ---------------------------------------------------------------------
+ #
+ # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+ # pour la SantÈ)
+ # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+ # Previous Authors : Laurent Guigues, Jean-Pierre Roux
+ # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+ #
+ # This software is governed by the CeCILL-B license under French law and
+ # abiding by the rules of distribution of free software. You can use,
+ # modify and/ or redistribute the software under the terms of the CeCILL-B
+ # license as circulated by CEA, CNRS and INRIA at the following URL
+ # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+ # or in the file LICENSE.txt.
+ #
+ # As a counterpart to the access to the source code and rights to copy,
+ # modify and redistribute granted by the license, users are provided only
+ # with a limited warranty and the software's author, the holder of the
+ # economic rights, and the successive licensors have only limited
+ # liability.
+ #
+ # The fact that you are presently reading this means that you have had
+ # knowledge of the CeCILL-B license and that you accept its terms.
+ # ------------------------------------------------------------------------ */
+
+
+/*=========================================================================
Program: bbtk
Module: $RCSfile: bbvtkSegmentationConnectivity.cxx,v $
Language: C++
- Date: $Date: 2008/10/17 08:18:30 $
- Version: $Revision: 1.4 $
+ Date: $Date: 2012/11/16 08:51:58 $
+ Version: $Revision: 1.8 $
=========================================================================*/
-/* ---------------------------------------------------------------------
-
-* Copyright (c) CREATIS-LRMN (Centre de Recherche en Imagerie Medicale)
-* Authors : Eduardo Davila, Laurent Guigues, Jean-Pierre Roux
-*
-* This software is governed by the CeCILL-B license under French law and
-* abiding by the rules of distribution of free software. You can use,
-* modify and/ or redistribute the software under the terms of the CeCILL-B
-* license as circulated by CEA, CNRS and INRIA at the following URL
-* http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-* or in the file LICENSE.txt.
-*
-* As a counterpart to the access to the source code and rights to copy,
-* modify and redistribute granted by the license, users are provided only
-* with a limited warranty and the software's author, the holder of the
-* economic rights, and the successive licensors have only limited
-* liability.
-*
-* The fact that you are presently reading this means that you have had
-* knowledge of the CeCILL-B license and that you accept its terms.
-* ------------------------------------------------------------------------ */
-
/**
* \file
* \brief
*/
-
#ifdef _USE_VTK_
-
#include "bbvtkSegmentationConnectivity.h"
#include "bbvtkPackage.h"
+#include "bbtkStaticLecture.h"
+
namespace bbvtk
{
-
BBTK_ADD_BLACK_BOX_TO_PACKAGE(vtk,SegmentationConnectivity);
BBTK_BLACK_BOX_IMPLEMENTATION(SegmentationConnectivity,
bbtk::AtomicBlackBox);
-
-
- void SegmentationConnectivity::bbUserConstructor()
+
+// --------------------------------------------------------------
+
+ void SegmentationConnectivity::bbUserSetDefaultValues()
{
- bbSetInputIn(NULL);
- std::vector<int> position;
- position.push_back(0);
- position.push_back(0);
- position.push_back(0);
- bbSetInputPositionXYZ(position);
- std::vector<int> threshold;
- threshold.push_back(0);
- threshold.push_back(0);
- bbSetInputThresholdMinMax(threshold);
- bbSetOutputOut(NULL);
- thresh2 = vtkImageThreshold::New();
- thresh2->SetInValue(255);
- thresh2->SetOutputScalarTypeToUnsignedShort();
- thresh2->SetOutValue(0);
- cast2 = vtkImageCast::New();
- cast2->SetInput(thresh2->GetOutput());
- cast2->SetOutputScalarTypeToUnsignedChar();
- connect2 = vtkImageSeedConnectivity::New();
- connect2->SetInput(cast2->GetOutput());
- connect2->SetInputConnectValue(255);
- connect2->SetOutputConnectedValue(255);
- connect2->SetOutputUnconnectedValue(0);
- cast4 = vtkImageCast::New();
- cast4->SetInput(connect2->GetOutput());
- cast4->SetOutputScalarTypeToUnsignedShort();
+ thresh2 = NULL;
+// cast2 = NULL;
+ connect2 = NULL;
+ cast4 = NULL;
+
+ bbSetInputIn(NULL);
+ std::vector<int> position;
+ position.push_back(0);
+ position.push_back(0);
+ position.push_back(0);
+ bbSetInputPositionXYZ(position);
+ std::vector<int> threshold;
+ threshold.push_back(0);
+ threshold.push_back(0);
+ bbSetInputThresholdMinMax(threshold);
+ bbSetOutputOut(NULL);
+
+ bbSetInputOutputFormat("SAME");
+ bbSetInputValue(255);
+
+
}
-
-
- void SegmentationConnectivity::bbUserDestructor()
+
+// --------------------------------------------------------------
+
+ void SegmentationConnectivity::bbUserInitializeProcessing()
+ {
+
+ thresh2 = vtkImageThreshold::New();
+ thresh2->SetInValue(255);
+ thresh2->SetOutputScalarTypeToUnsignedChar();
+ connect2 = vtkImageSeedConnectivity::New();
+ connect2->SetInput(thresh2->GetOutput());
+ connect2->SetInputConnectValue(255);
+ connect2->SetOutputConnectedValue( 255 );
+ connect2->SetOutputUnconnectedValue(0);
+ cast4 = vtkImageCast::New();
+ cast4->SetInput(connect2->GetOutput());
+
+// EED 2016 06 15
+
+/*
+ thresh2 = vtkImageThreshold::New();
+ thresh2->SetInValue(255);
+ thresh2->SetOutputScalarTypeToUnsignedShort();
+ thresh2->SetOutValue(0);
+ cast2 = vtkImageCast::New();
+ cast2->SetInput(thresh2->GetOutput());
+ cast2->SetOutputScalarTypeToUnsignedChar();
+ connect2 = vtkImageSeedConnectivity::New();
+ connect2->SetInput(cast2->GetOutput());
+ connect2->SetInputConnectValue(255);
+ connect2->SetOutputConnectedValue(255);
+ connect2->SetOutputUnconnectedValue(0);
+ cast4 = vtkImageCast::New();
+ cast4->SetInput(connect2->GetOutput());
+ cast4->SetOutputScalarTypeToUnsignedShort();
+*/
+
+ }
+
+// --------------------------------------------------------------
+
+ void SegmentationConnectivity::bbUserFinalizeProcessing()
{
- thresh2->Delete();
- cast2->Delete();
- connect2->Delete();
- cast4->Delete();
+ if (thresh2!=NULL)
+ {
+ thresh2->Delete();
+ thresh2=NULL;
+ }
+// if (cast2!=NULL)
+// {
+// cast2->Delete();
+// cast2=NULL;
+// }
+ if (connect2!=NULL)
+ {
+ connect2->Delete();
+ connect2=NULL;
+ }
+ if (cast4!=NULL)
+ {
+ cast4->Delete();
+ cast4=NULL;
+ }
}
+
+
+
+// --------------------------------------------------------------
+
void SegmentationConnectivity::DoProcess()
{
+ int outputformat = bbtkStaticLecture::GetTypeFormat( bbGetInputOutputFormat() , bbGetInputIn() );
+
+
+
vtkImageData *imagedata = bbGetInputIn();
imagedata->UpdateInformation();
imagedata->SetUpdateExtent(imagedata->GetWholeExtent());
thresh2->ThresholdBetween(3000, 3001);
thresh2->SetInput(imagedata);
thresh2->ThresholdBetween(bbGetInputThresholdMinMax()[0], bbGetInputThresholdMinMax()[1]);
+ thresh2->Modified();
thresh2->Update();
- cast2->Update();
+// EED 2016 06 15
+// cast2->Modified();
+// cast2->Update();
connect2->RemoveAllSeeds ();
- connect2->AddSeed( bbGetInputPositionXYZ()[0] , bbGetInputPositionXYZ()[1] , bbGetInputPositionXYZ()[2] );
- connect2->Update();
- cast4->Update();
-
- bbSetOutputOut(cast4->GetOutput() );
+
+ int x = bbGetInputPositionXYZ()[0];
+ int y = bbGetInputPositionXYZ()[1];
+ int z = bbGetInputPositionXYZ()[2];
+
+ int ext[6];
+ imagedata->GetWholeExtent(ext);
+ int maxx = ext[1]-ext[0]+1;
+ int maxy = ext[3]-ext[2]+1;
+ int maxz = ext[5]-ext[4]+1;
+ if ( x<0 ) { printf("Warnnig bbtk::vtk::SegmentationConnectivity::DoProcess limites of the image out of range x: %d -> 0 \n",x ); x=0; }
+ if ( y<0 ) { printf("Warnnig bbtk::vtk::SegmentationConnectivity::DoProcess limites of the image out of range y: %d -> 0 \n",y ); y=0;}
+ if ( z<0 ) { printf("Warnnig bbtk::vtk::SegmentationConnectivity::DoProcess limites of the image out of range z: %d -> 0 \n",z ); z=0;}
+
+ if ( x>=maxx ) { printf("Warnnig bbtk::vtk::SegmentationConnectivity::DoProcess limites of the image out of range x: %d -> %d \n",x, maxx-1 ); x=maxx-1; }
+ if ( y>=maxy ) { printf("Warnnig bbtk::vtk::SegmentationConnectivity::DoProcess limites of the image out of range y: %d -> %d \n",y, maxy-1 ); y=maxy-1; }
+ if ( z>=maxz ) { printf("Warnnig bbtk::vtk::SegmentationConnectivity::DoProcess limites of the image out of range z: %d -> %d \n",y, maxz-1 ); z=maxz-1; }
+
+ connect2->AddSeed( x,y,z );
+ connect2->SetOutputConnectedValue( bbGetInputValue() );
+ cast4->SetOutputScalarType( outputformat );
+
+ connect2->Modified();
+ connect2->Update();
+ cast4->Update();
+ bbSetOutputOut(cast4->GetOutput() );
}
-
}// EO namespace bbvtk
-
#endif //_USE_VTK_
git://git.creatis.insa-lyon.fr / bbtk.git / blobdiff