From: Eduardo DAVILA <davila@localhost.localdomain>
Date: Wed, 4 Apr 2018 05:40:58 +0000 (+0200)
Subject: #3184 BBTK Feature New Normal  -  In GetXCoherentInfoGdcmReader box extract Dicom... 
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=bbtk.git;a=commitdiff_plain;h=fef49cf06296bb65a839585dba63f282a89d91fc

#3184 BBTK Feature New Normal  -  In GetXCoherentInfoGdcmReader box extract Dicom Attributes
---

diff --git a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
index 197ed03..faabc03 100644
--- a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
+++ b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.cxx
@@ -106,7 +106,9 @@ void GetXCoherentInfoGdcmReader::Process()
    f->GetImageOrientationPatient(iop);
    
    for(i=0; i< 6; i++)
+	{
       v_iop.push_back(iop[i]);
+	}
    bbSetOutputIOP(v_iop );
  
    std::vector<double> v_ipp;
@@ -114,7 +116,9 @@ void GetXCoherentInfoGdcmReader::Process()
    f->GetImagePositionPatient(ipp);
    
    for(i=0; i< 3; i++)
+	{
       v_ipp.push_back(ipp[i]);
+	}
    bbSetOutputIPP(v_ipp );
 
 // Add *all the files* to the SerieHelper
@@ -135,9 +139,7 @@ void GetXCoherentInfoGdcmReader::Process()
    // Should only contain one!
    l = sh->GetFirstSingleSerieUIDFileSet();
 
-   int nbFiles;
    double zspacing = 0.;
-   nbFiles = l->size() ;
    sh->OrderFileList(l); // this one should compute the *actual* Z Spacing!
    zspacing = sh->GetZSpacing();
    std::vector<double> v_pixelspacing;
@@ -149,6 +151,34 @@ void GetXCoherentInfoGdcmReader::Process()
 //   }
    bbSetOutputPixelSpacing(v_pixelspacing);
 
+	VectorMapInfoDicom vectormapinfodicom;
+	uint16_t group;
+	uint16_t elem;
+	std::string key;
+	std::string strTagValue;  // read on disc
+	int iTag,sizeDicomTagsVector=bbGetInputDicomTags().size();
+   	GDCM_NAME_SPACE::FileList::const_iterator iitt = l->begin();
+   	//iitt ++;
+   	for ( ; iitt != l->end(); ++iitt)
+   	{
+		MapInfoDicom mapinfodicom;
+
+	  	for (iTag=0; iTag<sizeDicomTagsVector; iTag++)
+		{
+			key = bbGetInputDicomTags()[iTag];
+			group = elem = 0;
+			if ( (key.size()==10) && (key[0] == 'D') && (key[5] == '_') )
+			{
+			 	sscanf(key.c_str(),"D%04hx_%04hx ",&group,&elem);  
+			}// if key
+		  	strTagValue = (*iitt)->GetEntryString(group,elem);
+			mapinfodicom.insert ( std::pair<std::string,std::string>(key,strTagValue) );
+		} // for iTag
+
+		vectormapinfodicom.push_back( mapinfodicom );
+   } // for iitt
+   bbSetOutputDicomInfo( vectormapinfodicom );
+
    if (reader!=NULL)
    { 
       reader->Delete();
diff --git a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.h b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.h
index a37304b..f0b3c21 100644
--- a/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.h
+++ b/packages/gdcmvtk/src/bbgdcmvtkGetXCoherentInfoGdcmReader.h
@@ -47,20 +47,25 @@
 #include "vtkImageData.h"
 namespace bbgdcmvtk
 {
+	typedef std::map<std::string, std::string> 	MapInfoDicom;
+	typedef std::vector< MapInfoDicom > 		VectorMapInfoDicom;
 
 class bbgdcmvtk_EXPORT GetXCoherentInfoGdcmReader
  : 
    public bbtk::AtomicBlackBox
 {
+
   BBTK_BLACK_BOX_INTERFACE(GetXCoherentInfoGdcmReader,bbtk::AtomicBlackBox);
 
-  BBTK_DECLARE_INPUT(In,            std::vector<std::string>);
-  BBTK_DECLARE_INPUT(IPPSort,       bool);
+  BBTK_DECLARE_INPUT(In				, std::vector<std::string>);
+  BBTK_DECLARE_INPUT(IPPSort		, bool);
+  BBTK_DECLARE_INPUT(DicomTags		, std::vector<std::string>);
   
-  BBTK_DECLARE_OUTPUT(Out,          vtkImageData *);
-  BBTK_DECLARE_OUTPUT(IPP,          std::vector<double>);
-  BBTK_DECLARE_OUTPUT(IOP,          std::vector<double>);
-  BBTK_DECLARE_OUTPUT(PixelSpacing, std::vector<double>);
+  BBTK_DECLARE_OUTPUT(Out			, vtkImageData *);
+  BBTK_DECLARE_OUTPUT(IPP			, std::vector<double>);
+  BBTK_DECLARE_OUTPUT(IOP			, std::vector<double>);
+  BBTK_DECLARE_OUTPUT(PixelSpacing	, std::vector<double>);
+  BBTK_DECLARE_OUTPUT(DicomInfo		, VectorMapInfoDicom);
        
   BBTK_PROCESS(Process);
   void Process();
@@ -83,18 +88,20 @@ class bbgdcmvtk_EXPORT GetXCoherentInfoGdcmReader
   //=================================================================
   // UserBlackBox description
 BBTK_BEGIN_DESCRIBE_BLACK_BOX(GetXCoherentInfoGdcmReader,bbtk::AtomicBlackBox);
-BBTK_NAME("GetXCoherentInfoGdcmReader");
-BBTK_AUTHOR("jpr, eduardo");
-BBTK_DESCRIPTION("Get Dicom info from a File Set (a list of Dicom image file names) and read (as a vtkImageData)");
-BBTK_CATEGORY("");
-
-BBTK_INPUT(GetXCoherentInfoGdcmReader,In,     "List of Dicom image file names", std::vector<std::string>,"");
-BBTK_INPUT(GetXCoherentInfoGdcmReader,IPPSort,"Sort on Image Position Patient",bool,"");
-
-BBTK_OUTPUT(GetXCoherentInfoGdcmReader,Out,         "Output image",                vtkImageData *,"");
-BBTK_OUTPUT(GetXCoherentInfoGdcmReader,IPP,         "Image Position (Patient)",    std::vector<double>,"");
-BBTK_OUTPUT(GetXCoherentInfoGdcmReader,IOP,         "Image Orientation (Patient)", std::vector<double>,"");
-BBTK_OUTPUT(GetXCoherentInfoGdcmReader,PixelSpacing,"Pixel Spacing",               std::vector<double>,"");
+  BBTK_NAME("GetXCoherentInfoGdcmReader");
+  BBTK_AUTHOR("jpr, eduardo");
+  BBTK_DESCRIPTION("Get Dicom info from a File Set (a list of Dicom image file names) and read (as a vtkImageData)");
+  BBTK_CATEGORY("");
+
+  BBTK_INPUT(GetXCoherentInfoGdcmReader,In				,"List of Dicom image file names", std::vector<std::string>,"");
+  BBTK_INPUT(GetXCoherentInfoGdcmReader,IPPSort			,"Sort on Image Position Patient", bool,"");
+  BBTK_INPUT(GetXCoherentInfoGdcmReader,DicomTags		,"Dicom Tags (vector of Dicom tags ex: D0028_0030  D0020_0037)", std::vector<std::string>,"");
+
+  BBTK_OUTPUT(GetXCoherentInfoGdcmReader,Out			,"Output image"					, vtkImageData *,"");
+  BBTK_OUTPUT(GetXCoherentInfoGdcmReader,IPP			,"Image Position (Patient)"		, std::vector<double>,"");
+  BBTK_OUTPUT(GetXCoherentInfoGdcmReader,IOP			,"Image Orientation (Patient)"	, std::vector<double>,"");
+  BBTK_OUTPUT(GetXCoherentInfoGdcmReader,PixelSpacing	,"Pixel Spacing"				, std::vector<double>,"");
+  BBTK_OUTPUT(GetXCoherentInfoGdcmReader,DicomInfo		,"vector of maps of Dicom tags"	, VectorMapInfoDicom,"");
 BBTK_END_DESCRIBE_BLACK_BOX(GetXCoherentInfoGdcmReader);
 } // EO namespace bbgdcmvtk