Prefer to use link instead of copy for ccIn2p3 data

[clitk.git] / cluster_tools / gate_job_ccin2p3.job

diff --git a/cluster_tools/gate_job_ccin2p3.job b/cluster_tools/gate_job_ccin2p3.job
index c7abaacb11eb6d62d3ef05ca1da5e5735ce725a9..f07f9c2efec8d8b69ab0df6dd28584fcdc93f496 100644 (file)
--- a/cluster_tools/gate_job_ccin2p3.job
+++ b/cluster_tools/gate_job_ccin2p3.job
@@ -22,6 +22,7 @@ function transferJobData {
     mkdir "${OUTPUTDIR}/output.${JOB_ID%%.*}"
     rsync -av --remove-source-files output/ "${OUTPUTDIR}/output.${JOB_ID%%.*}"
     echo "Cleanup"
+    unlink "${LOCALMACRODIR}"/data
     rm -r ${LOCALMACRODIR}
 }
 
@@ -76,7 +77,9 @@ echo "Copying inputs"
 LOCALMACRODIR=$(mktemp -d)
 trap "wait ; transferJobData ; exit 1" 1 2 3 15
 cd ${LOCALMACRODIR}
-cp -r -L "${MACRODIR}"/{data,mac} .
+cp -r -L "${MACRODIR}"/mac .
+ln -s "${MACRODIR}"/data ./data
+#cp -r -L "${MACRODIR}"/{data,mac} .
 mkdir output
 
 # Enforce one thread