From: tbaudier Date: Fri, 11 Jan 2019 12:43:06 +0000 (+0100) Subject: Cosmetic X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff_plain;h=7f257bb16342aa315291cef76f33d9fe727fc07b Cosmetic Remove trailing spaces and indent correctly --- diff --git a/tools/clitkDicomRTPlan2Gate.cxx b/tools/clitkDicomRTPlan2Gate.cxx index 3f07c8e..c608034 100644 --- a/tools/clitkDicomRTPlan2Gate.cxx +++ b/tools/clitkDicomRTPlan2Gate.cxx @@ -38,8 +38,7 @@ int main(int argc, char * argv[]) gdcm::Reader reader; reader.SetFileName(input_file); - if( !reader.Read() ) - { + if(!reader.Read()) { std::cerr << "Failed to read: " << input_file << std::endl; return 1; } @@ -49,81 +48,77 @@ int main(int argc, char * argv[]) //Check file type gdcm::MediaStorage ms; ms.SetFromFile(reader.GetFile()); - if( ms != gdcm::MediaStorage::RTIonPlanStorage ) - { + if(ms != gdcm::MediaStorage::RTIonPlanStorage) { std::cerr << "The file <" << input_file << "> is not a RT Ion Plan." << std::endl; exit(0); } - + std::ofstream output; output.open(output_file); output << "#TREATMENT-PLAN-DESCRIPTION" << "\n"; - + gdcm::Attribute<0x300a,0x2> label; label.SetFromDataSet(ds); gdcm::Attribute<0x300a,0x3> planName; planName.SetFromDataSet(ds); - + output << "#PlanName\n"<< planName.GetValue() << "\n"; - + gdcm::Tag tFractionGroupSQ(0x300a,0x70); gdcm::Attribute<0x300a,0x71> fractionID; gdcm::Attribute<0x300a,0x78> numberOfFractions; gdcm::Attribute<0x300a,0x80> numberOfBeams; - + gdcm::Tag tReferencedBeamSQ(0x300c,0x4); gdcm::Attribute<0x300a,0x86> meterSet; gdcm::Attribute<0x300c,0x6> beamID; - + const gdcm::DataElement &FractionGroupSQ = ds.GetDataElement( tFractionGroupSQ ); gdcm::SmartPointer sqf = FractionGroupSQ.GetValueAsSQ(); gdcm::Item &ReferencedBeamItem = sqf->GetItem(1); gdcm::DataSet &ReferencedBeamData = ReferencedBeamItem.GetNestedDataSet(); numberOfFractions.SetFromDataSet(ReferencedBeamData); - + output << "#NumberOfFractions\n"<< numberOfFractions.GetValue() << "\n"; - - for( unsigned int fidx = 1; fidx <= sqf->GetNumberOfItems(); ++fidx ) - { + + for(unsigned int fidx = 1; fidx <= sqf->GetNumberOfItems(); ++fidx) { gdcm::Item &ReferencedBeamItem = sqf->GetItem(fidx); gdcm::DataSet &ReferencedBeamData = ReferencedBeamItem.GetNestedDataSet(); - + fractionID.SetFromDataSet(ReferencedBeamData); numberOfFractions.SetFromDataSet(ReferencedBeamData); numberOfBeams.SetFromDataSet(ReferencedBeamData); output << "##FractionID\n"<< fractionID.GetValue() << "\n"; output << "##NumberOfFields\n"<< numberOfBeams.GetValue() << "\n"; - + const gdcm::DataElement &ReferencedBeamSQ = ReferencedBeamData.GetDataElement(tReferencedBeamSQ); - gdcm::SmartPointer sqb = ReferencedBeamSQ.GetValueAsSQ(); - for( unsigned int bidx = 1; bidx <= sqb->GetNumberOfItems(); ++bidx ) - { + gdcm::SmartPointer sqb = ReferencedBeamSQ.GetValueAsSQ(); + for(unsigned int bidx = 1; bidx <= sqb->GetNumberOfItems(); ++bidx) { gdcm::Item &ReferencedBeamGroupItem = sqb->GetItem(bidx); gdcm::DataSet &ReferencedBeamGroupData = ReferencedBeamGroupItem.GetNestedDataSet(); - + meterSet.SetFromDataSet(ReferencedBeamGroupData); beamID.SetFromDataSet(ReferencedBeamGroupData); output << "###FieldsID\n"<< beamID.GetValue() << "\n"; } } - + gdcm::Tag tPatientSetupSQ(0x300a,0x180); gdcm::Attribute<0x0018,0x5100> position; gdcm::Attribute<0x300a,0x1b0> setupTechnique; gdcm::Attribute<0x300a,0x182> setupID; - + const gdcm::DataElement &PatientSetupSQ = ds.GetDataElement( tPatientSetupSQ ); gdcm::SmartPointer sqs = PatientSetupSQ.GetValueAsSQ(); - for( unsigned int sidx = 1; sidx <= sqs->GetNumberOfItems(); ++sidx ) - { + for(unsigned int sidx = 1; sidx <= sqs->GetNumberOfItems(); ++sidx) { gdcm::Item &PatientSetupItem = sqs->GetItem(sidx); gdcm::DataSet &PatientSetupData = PatientSetupItem.GetNestedDataSet(); - + position.SetFromDataSet(PatientSetupData); setupTechnique.SetFromDataSet(PatientSetupData); setupID.SetFromDataSet(PatientSetupData); } - + gdcm::Tag tIonBeamSQ(0x300a,0x3a2); gdcm::Attribute<0x300a,0xb2> machine; gdcm::Attribute<0x300a,0xc6> radiationType; @@ -139,10 +134,10 @@ int main(int argc, char * argv[]) gdcm::Attribute<0x300a,0x312> numberOfRangeShifters; gdcm::Attribute<0x300a,0x330> numberOfLateralSpreadingDevices; gdcm::Attribute<0x300a,0x340> numberOfRangeModulators; - + //gdcm::Tag tSnoutSQ(0x300a,0x30c); //gdcm::Attribute<0x300a,0x30f> snoutID; - + gdcm::Tag tControlPointSQ(0x300a,0x3a8); gdcm::Attribute<0x300a,0x15> energyUnit; gdcm::Attribute<0x300a,0x114> energyValue; @@ -150,36 +145,34 @@ int main(int argc, char * argv[]) gdcm::Attribute<0x300a,0x134> cumulativeMetersetWeight; gdcm::Attribute<0x300a,0x392> numberOfScannedSpots; gdcm::Attribute<0x300a,0x390> spotTunnedID; - + gdcm::Tag tSpotPositionsData(0x300a,0x394); gdcm::Attribute<0x300a,0x394> spotPositions; gdcm::Tag tSpotWeightsData(0x300a,0x396); gdcm::Attribute<0x300a,0x396> spotWeights; - + gdcm::Attribute<0x300a,0x11e> gantryAngle; gdcm::Attribute<0x300a,0x122> patientSupportAngle; gdcm::Attribute<0x300a,0x12c> isocenterPosition; - + long totalCumMeterSet = 0; - + const gdcm::DataElement &IonBeamSQ = ds.GetDataElement( tIonBeamSQ ); gdcm::SmartPointer sqi = IonBeamSQ.GetValueAsSQ(); - - for( unsigned int iidx = 1; iidx <= sqi->GetNumberOfItems(); ++iidx ) - { + + for(unsigned int iidx = 1; iidx <= sqi->GetNumberOfItems(); ++iidx) { gdcm::Item &IonBeamItem = sqi->GetItem(iidx); gdcm::DataSet &IonBeamData = IonBeamItem.GetNestedDataSet(); finalCumulativeMeterSetWeight.SetFromDataSet(IonBeamData); totalCumMeterSet += finalCumulativeMeterSetWeight.GetValue(); } - + output << "#TotalMetersetWeightOfAllFields\n" << totalCumMeterSet << "\n"; - - for( unsigned int iidx = 1; iidx <= sqi->GetNumberOfItems(); ++iidx ) - { + + for(unsigned int iidx = 1; iidx <= sqi->GetNumberOfItems(); ++iidx) { gdcm::Item &IonBeamItem = sqi->GetItem(iidx); gdcm::DataSet &IonBeamData = IonBeamItem.GetNestedDataSet(); - + machine.SetFromDataSet(IonBeamData); radiationType.SetFromDataSet(IonBeamData); treatmentType.SetFromDataSet(IonBeamData); @@ -194,28 +187,27 @@ int main(int argc, char * argv[]) numberOfRangeShifters.SetFromDataSet(IonBeamData); numberOfLateralSpreadingDevices.SetFromDataSet(IonBeamData); numberOfRangeModulators.SetFromDataSet(IonBeamData); - + /* const gdcm::DataElement &SnoutSQ = IonBeamData.GetDataElement(tSnoutSQ); gdcm::SmartPointer sqsn = SnoutSQ.GetValueAsSQ(); - for( unsigned int snidx = 1; snidx <= sqsn->GetNumberOfItems(); ++snidx ) - { + for(unsigned int snidx = 1; snidx <= sqsn->GetNumberOfItems(); ++snidx) { gdcm::Item &SnoutItem = sqsn->GetItem(snidx); gdcm::DataSet &SnoutData = SnoutItem.GetNestedDataSet(); - + snoutID.SetFromDataSet(SnoutData); } */ - + const gdcm::DataElement &ControlPointSQ = IonBeamData.GetDataElement(tControlPointSQ); gdcm::SmartPointer sqcp = ControlPointSQ.GetValueAsSQ(); gdcm::Item &ControlPointItem = sqcp->GetItem(1); gdcm::DataSet &ControlPointData = ControlPointItem.GetNestedDataSet(); - + gantryAngle.SetFromDataSet(ControlPointData); patientSupportAngle.SetFromDataSet(ControlPointData); isocenterPosition.SetFromDataSet(ControlPointData); - + output << "\n#FIELD-DESCRIPTION" << "\n"; output << "###FieldID\n"<< ionBeamID.GetValue() << "\n"; output << "###FinalCumulativeMeterSetWeight\n"<< finalCumulativeMeterSetWeight.GetValue() << "\n"; @@ -226,59 +218,51 @@ int main(int argc, char * argv[]) output << " " << isocenterPosition.GetValue(2) << "\n"; output << "###NumberOfControlPoints\n" << numberOfControlPoints.GetValue() << "\n\n"; output << "#SPOTS-DESCRIPTION" << "\n"; - - for( unsigned int cpidx = 1; cpidx <= sqcp->GetNumberOfItems(); ++cpidx ) - { + + for(unsigned int cpidx = 1; cpidx <= sqcp->GetNumberOfItems(); ++cpidx) { gdcm::Item &ControlPointItem = sqcp->GetItem(cpidx); gdcm::DataSet &ControlPointData = ControlPointItem.GetNestedDataSet(); - - if ( cpidx == 1 ) - { - gantryAngle.SetFromDataSet(ControlPointData); - patientSupportAngle.SetFromDataSet(ControlPointData); - isocenterPosition.SetFromDataSet(ControlPointData); + + if(cpidx == 1) { + gantryAngle.SetFromDataSet(ControlPointData); + patientSupportAngle.SetFromDataSet(ControlPointData); + isocenterPosition.SetFromDataSet(ControlPointData); } - - if ( cpidx < sqcp->GetNumberOfItems() ) - { - energyUnit.SetFromDataSet(ControlPointData); - energyValue.SetFromDataSet(ControlPointData); - controlPointIndex.SetFromDataSet(ControlPointData); - cumulativeMetersetWeight.SetFromDataSet(ControlPointData); - numberOfScannedSpots.SetFromDataSet(ControlPointData); - spotTunnedID.SetFromDataSet(ControlPointData); - - const gdcm::DataElement &spotPositionsData = ControlPointData.GetDataElement(tSpotPositionsData); - spotPositions.SetFromDataElement(spotPositionsData); - const gdcm::DataElement &spotWeightsData = ControlPointData.GetDataElement(tSpotWeightsData); - spotWeights.SetFromDataElement(spotWeightsData); + + if(cpidx < sqcp->GetNumberOfItems()) { + energyUnit.SetFromDataSet(ControlPointData); + energyValue.SetFromDataSet(ControlPointData); + controlPointIndex.SetFromDataSet(ControlPointData); + cumulativeMetersetWeight.SetFromDataSet(ControlPointData); + numberOfScannedSpots.SetFromDataSet(ControlPointData); + spotTunnedID.SetFromDataSet(ControlPointData); + + const gdcm::DataElement &spotPositionsData = ControlPointData.GetDataElement(tSpotPositionsData); + spotPositions.SetFromDataElement(spotPositionsData); + const gdcm::DataElement &spotWeightsData = ControlPointData.GetDataElement(tSpotWeightsData); + spotWeights.SetFromDataElement(spotWeightsData); } - - if ( cpidx == sqcp->GetNumberOfItems() ) - { - energyUnit.SetValue( "0" ); - energyValue.SetValue( 0 ); - controlPointIndex.SetFromDataSet(ControlPointData); - cumulativeMetersetWeight.SetFromDataSet(ControlPointData); - numberOfScannedSpots.SetValue( 0 ); - spotTunnedID.SetValue( "0" ); + + if(cpidx == sqcp->GetNumberOfItems()) { + energyUnit.SetValue( "0" ); + energyValue.SetValue( 0 ); + controlPointIndex.SetFromDataSet(ControlPointData); + cumulativeMetersetWeight.SetFromDataSet(ControlPointData); + numberOfScannedSpots.SetValue( 0 ); + spotTunnedID.SetValue( "0" ); } - + output << "####ControlPointIndex\n" << controlPointIndex.GetValue() << "\n"; output << "####SpotTunnedID\n" << spotTunnedID.GetValue() << "\n"; output << "####CumulativeMetersetWeight\n" << cumulativeMetersetWeight.GetValue() << "\n"; output << "####Energy (MeV)\n"<< energyValue.GetValue() << "\n"; output << "####NbOfScannedSpots\n" << numberOfScannedSpots.GetValue() << "\n"; output << "####X Y Weight\n"; - for ( unsigned int sp=0; sp < numberOfScannedSpots.GetValue(); ++sp) - { - output << spotPositions.GetValue(2*sp) << " " << spotPositions.GetValue(2*sp+1) << " " << spotWeights.GetValue(sp) << "\n"; - } - + for( unsigned int sp=0; sp < numberOfScannedSpots.GetValue(); ++sp) + output << spotPositions.GetValue(2*sp) << " " << spotPositions.GetValue(2*sp+1) << " " << spotWeights.GetValue(sp) << "\n"; } - } - + return 0; }