From 5f801bf0b07486889123e941d6913d4369dfc86f Mon Sep 17 00:00:00 2001
From: tbaudier <thomas.baudier@creatis.insa-lyon.fr>
Date: Wed, 19 Dec 2018 15:50:37 +0100
Subject: [PATCH] Debug opening dicom with rotation matrix

With the introduction of the choose in the Image reader to open the dicom with or without the patient coordinate system, I need to pass the value of the patient flag to take into account the transformation matrix
---
 tools/clitkDicom2Image.cxx | 1 +
 1 file changed, 1 insertion(+)

diff --git a/tools/clitkDicom2Image.cxx b/tools/clitkDicom2Image.cxx
index aa63b04..5c9889b 100644
--- a/tools/clitkDicom2Image.cxx
+++ b/tools/clitkDicom2Image.cxx
@@ -201,6 +201,7 @@ int main(int argc, char * argv[])
     // Read write serie
     vvImageReader::Pointer reader = vvImageReader::New();
     reader->SetInputFilenames(sorted_files);
+    reader->SetPatientCoordinateSystem(args_info.patientSystem_flag);
     reader->Update(vvImageReader::DICOM);
     if (reader->GetLastError().size() != 0) {
       std::cerr << reader->GetLastError() << std::endl;
-- 
2.45.0