# ------------------------------------------------------------------------
*/
-
-#include "creaImageIOSimpleView.h"
#include "boost/filesystem/operations.hpp"
#include "boost/filesystem/fstream.hpp"
+#include "creaImageIOSimpleView.h"
+#include "creaImageIOUnMosaicVtkImageData.h"
+
namespace creaImageIO
{
- bool SimpleView::readFile(std::vector<std::string> i_filenames, std::vector<vtkImageData *> &i_img)
+ bool SimpleView::readFile( std::vector<std::string> i_filenames, // in information names
+ std::vector<std::string> i_attr, // in information attributes names
+ std::vector<std::map <std::string , std::string> > &i_imgAttr, // out information attributes names-values
+ std::vector<vtkImageData *> &i_img) // out information vtkImageData
{
+
+ //Mosaic Attribute for Simens
+ i_attr.push_back("D0019_100a"); // Number of images in mosaic (Simens)
+ i_attr.push_back("D0018_0088"); // Spacing Between Slices
+
+
+
+ creaImageIOUnMosaicVtkImageData Mosaic;
+ vtkImageData* tmpImg1;
+ vtkImageData* tmpImg2;
+ int numberOfImagesInMosaic;
+ double spc[3];
+ double spcZ;
+
bool bresult, bfinal = true;
ImageReader *mReader = new ImageReader();
std::vector<std::string>::iterator it = i_filenames.begin();
bresult = mReader->CanRead((*it).c_str());
if(bresult)
{
- i_img.push_back(mReader->ReadImage((*it).c_str()));
- }
- else
- {
+ std::map <std::string , std::string> mapAttr;
+ mReader->getAttributes( (*it).c_str() , mapAttr, i_attr ); // filename, outMapAttr-NameValue, inVectAttributeName
+ i_imgAttr.push_back( mapAttr );
+
+//EED borrame
+// i_img.push_back( mReader->ReadImage( (*it).c_str() ) );
+
+
+ // EED 18 octt 2014
+ std::map <std::string , std::string>::iterator itMapAttr;
+ std::string numberOfImagesInMosaicStr="";
+ std::string spaceBetweenSliceStr="";
+
+ itMapAttr = mapAttr.find("D0019_100a");
+ if ( itMapAttr!=mapAttr.end() ) numberOfImagesInMosaicStr = itMapAttr->second;
+
+// std::string numberOfImagesInMosaicStr = mapAttr.find("D0019_100a")->second;
+ itMapAttr = mapAttr.find("D0018_0088");
+ if ( itMapAttr!=mapAttr.end() ) spaceBetweenSliceStr = itMapAttr->second;
+
+// std::string spaceBetweenSliceStr = mapAttr.find("D0018_0088")->second;
+ if (numberOfImagesInMosaicStr=="")
+ {
+ i_img.push_back( mReader->ReadImage( (*it).c_str() ) );
+ } else {
+ numberOfImagesInMosaic = atoi(numberOfImagesInMosaicStr.c_str());
+ spcZ = atoi(spaceBetweenSliceStr.c_str());
+ tmpImg1 = mReader->ReadImage( (*it).c_str() ) ;
+ tmpImg1->GetSpacing( spc );
+ tmpImg2 = Mosaic.unMosaic( tmpImg1 , numberOfImagesInMosaic );
+ tmpImg2->SetSpacing( spc[0], spc[1], spcZ );
+ i_img.push_back( tmpImg2 );
+ }// elemet
+
+ } else {
+ printf("ERROR. Impossible to read file %s\n", (*it).c_str() );
bfinal = false;
- }
- }
+ } // if
+ } // for
delete mReader;
+
return bfinal;
}
- bool SimpleView::readDirectory(const std::string i_pathname, std::vector<vtkImageData *> &i_imgs)
+
+ bool SimpleView::readDirectory( const std::string i_pathname, // in information names
+ std::vector<std::string> i_attr, // in information attributes names
+ std::vector<std::map <std::string , std::string> > &i_imgAttr, // out information attributes names-values
+ std::vector<vtkImageData *> &i_imgs) // out information vtkImageData
{
bool bresult = true;
ImageReader *mReader = new ImageReader();
for(int i=0; i<lgr; i++)
{
- std::cout << names[i] << std::endl;
+ std::cout << names[i] << std::endl;
+
+ std::map <std::string , std::string> mapAttr;
+ mReader->getAttributes( names[i] , mapAttr, i_attr ); // filename, outMapAttr-NameValue, inVectAttributeName
+ i_imgAttr.push_back( mapAttr );
+
+ //UnMosaic step..
+
i_imgs.push_back( mReader->ReadImage(names[i]) );
}
}