From: Frederic Cervenansky <Frederic.Cervenansky@creatis.insa-lyon.fr>
Date: Sun, 18 Dec 2011 23:07:42 +0000 (+0000)
Subject: allow data anonymization
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=creaImageIO.git;a=commitdiff_plain;h=a881ab2fb97d10dd3cff975444f81b0b497b2ad7

allow data anonymization
---

diff --git a/src/creaImageIOGimmickView.cpp b/src/creaImageIOGimmickView.cpp
index 76342d6..02d18a7 100644
--- a/src/creaImageIOGimmickView.cpp
+++ b/src/creaImageIOGimmickView.cpp
@@ -5,6 +5,8 @@
 #if defined(USE_GDCM)
 #include <gdcmGlobal.h>
 #include <gdcmSerieHelper.h>
+#include <gdcmFileHelper.h>
+#include <gdcmUtil.h>
 #include <vtkGdcmReader.h>
 #endif
 
@@ -839,6 +841,66 @@ void GimmickView::ReadImagesNotThreadedInVector(std::vector<vtkImageData*>& s, s
   
 
 
+////////////////////////////////////////////////////////////////////////
+void GimmickView::Anonymize(std::vector<std::string> i_filenames, int type)
+{
+ 	bool res = true;
+   std::vector<GDCM_NAME_SPACE::FileHelper *> filesH;
+   std::vector<std::string> suid;
+   std::map<std::string, std::string> msuid;
+   std::string tempuid = GDCM_NAME_SPACE::Util::CreateUniqueUID();
+   int i = 1;
+   std::vector<std::string>::iterator it = i_filenames.begin();
+   for(; it != i_filenames.end(); it++)
+   {
+
+	   GDCM_NAME_SPACE::File *file;
+	   file = GDCM_NAME_SPACE::File::New(  );
+	   file->SetLoadMode( GDCM_NAME_SPACE::LD_ALL );
+	   file->SetFileName( (*it).c_str() );
+	   res = file->Load();
+	   if ( !res ) 
+	   {
+			std::cerr << "Sorry, " <<  (*it).c_str()  <<"  not a gdcm-readable "
+                 << "DICOM / ACR File" <<std::endl;
+			file ->Delete();
+       //return 0;
+		}
+		std::cout << " ... is readable " << std::endl;
+		
+		// We need a gdcm::FileHelper, since we want to load the pixels        
+		GDCM_NAME_SPACE::FileHelper *fh = GDCM_NAME_SPACE::FileHelper::New(file);
+	
+   uint8_t *imageData = fh->GetImageData();
+
+	   // Institution name 
+	   file->AddAnonymizeElement(0x0008, 0x0080, "*"); 
+	   // Patient's name 
+	   file->AddAnonymizeElement(0x0010, 0x0010, "*");   
+	   // Patient's ID
+	   file->AddAnonymizeElement( 0x0010, 0x0020,"1515" );   
+	   // Study Instance UID
+	   file->AddAnonymizeElement(0x0020, 0x000d, tempuid );
+	   // Telephone
+	   file->AddAnonymizeElement(0x0010, 0x2154, "3615" );
+
+	   // Aware user will add here more fields to anonymize here
+
+	   // The gdcm::File is modified in memory
+
+	   file->AnonymizeFile();
+
+	   
+	   i++;
+	   fh->SetContentType(GDCM_NAME_SPACE::UNMODIFIED_PIXELS_IMAGE);
+   
+	   fh->WriteDcmExplVR(file->GetFileName() +".ano1" );
+	   std::cout << i <<"  End Anonymize" << std::cout;  
+	   file->ClearAnonymizeList();
+	   file->Delete();
+	   fh->Delete();
+   }
+}
 ////////////////////////////////////////////////////////////////////////
 //void GimmickView::Anonymize(std::vector<std::string> i_filenames, int type)
 //{
diff --git a/src/creaImageIOGimmickView.h b/src/creaImageIOGimmickView.h
index c34f895..fb9f177 100644
--- a/src/creaImageIOGimmickView.h
+++ b/src/creaImageIOGimmickView.h
@@ -12,8 +12,8 @@
 #include <creaImageIOMultiThreadImageReader.h>
 #endif
 
-#if defined(USE_QT4)
-#include <creaImageIOQMultiThreadImageReader.h>
+#if defined(USE_QT)
+#include "Qt/creaImageIOQMultiThreadImageReader.h"
 #endif
 
 
@@ -112,8 +112,7 @@ namespace creaImageIO
 	  { GimmickError("INTERNAL ERROR : EditFields not implemented"); }
       
 	  /// Anonymize or de-anonymize data
-	  virtual void Anonymize(std::vector<std::string> i_filenames, int type)
-	  { GimmickError("INTERNAL ERROR : Anonymize not implemented"); }
+	  void Anonymize(std::vector<std::string> i_filenames, int type);
 
 	  /// Display all Dicom Tags
 	  virtual void DumpTags(const std::string filename)
diff --git a/src/creaImageIOWxTreeView.cpp b/src/creaImageIOWxTreeView.cpp
index 34db01a..49bba9b 100644
--- a/src/creaImageIOWxTreeView.cpp
+++ b/src/creaImageIOWxTreeView.cpp
@@ -222,11 +222,11 @@ namespace creaImageIO
 	wxMenuItem* m4Item=menuItem->Append(wxID_ANY, _T("&Display Dicom Tags"));
 	menuItem->AppendSubMenu(subExportMenu, wxT("&Export"));
 
-#if defined(USE_GDCM_ANOM)
+
 	wxMenuItem* m1Item=menuItem->Append(wxID_ANY, _T("&Anonymize"));
 	mAnonymizingID=m1Item->GetId();
-	Connect( mAnonymizingID, wxEVT_COMMAND_MENU_SELECTED, wxCommandEventHandler(WxTreeView::OnAnonymize) );
-#endif
+	Connect( mAnonymizingID, wxEVT_COMMAND_MENU_SELECTED, wxCommandEventHandler(WxTreeView::OnAnonymizer) );
+
 	mLocalCopyID=m2Item->GetId();
 	mEditFieldID=m3Item->GetId();
 	mDumpID=m4Item->GetId();
@@ -821,11 +821,11 @@ namespace creaImageIO
 	   wxBusyCursor busy;
 	   std::vector<std::string> filesname;
 	   std::vector<tree::Node*> nodes;
-//	   nodes.push_back(((ItemData*)GetCtrl(mLastRightLevel)->GetItemData(mLastRightSelected))->node);
+	   nodes.push_back(((ItemData*)GetCtrl(mLastRightLevel)->GetItemData(mLastRightSelected))->node);
   	   if(nodes.size() != 0)
 	   {
 		   GetFilenamesAsString(nodes,filesname);
-		//   GetGimmickView()->Anonymize(filesname,0);
+		   GetGimmickView()->Anonymize(filesname,0);
 	   }
 	
   }