From: ctorres Date: Fri, 6 Jun 2014 15:04:27 +0000 (+0200) Subject: 2387 creaVtk Feature New Normal New box, lib, script ImageDataStructuredPoints 2014... X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?p=creaVtk.git;a=commitdiff_plain;h=e43b0b51b764feb4d6b69c1b78f37233f8f5e439 2387 creaVtk Feature New Normal New box, lib, script ImageDataStructuredPoints 2014-06-06 17:03 --- diff --git a/bbtk_creaVtk_PKG/bbs/appli/exampleImageDataStructuresPoints.bbg b/bbtk_creaVtk_PKG/bbs/appli/exampleImageDataStructuresPoints.bbg new file mode 100644 index 0000000..1d262bc --- /dev/null +++ b/bbtk_creaVtk_PKG/bbs/appli/exampleImageDataStructuresPoints.bbg @@ -0,0 +1,56 @@ +# ---------------------------------- +# - BBTKGEditor v 1.4 BBG BlackBox Diagram file +# - /home/ctorres/Documents/creatis/creaVtk/bbtk_creaVtk_PKG/bbs/appli/exampleImageDataStructuresPoints.bbg +# ---------------------------------- + +APP_START +CATEGORY: +DESCRIPTION:Description ?? +AUTHOR:Author ?? +COMPLEXBOX:FALSE +COMPLEXINPUTS:0 +BOXES:5 +BOX +creaVtk:ImageDataStructuredPoints:Box00 +ISEXEC:TRUE +-23.896150:21.040635:-900.000000 +47.278850:11.040635:-900.000000 +FIN_BOX +BOX +creaImageIO:ImagesChooserDialogBox:Box01 +ISEXEC:FALSE +-117.977848:82.058478:-900.000000 +-46.802848:72.058478:-900.000000 +FIN_BOX +BOX +creaImageIO:ImagesChooserDialogBox:Box02 +ISEXEC:FALSE +-37.722853:81.156736:-900.000000 +33.452147:71.156736:-900.000000 +FIN_BOX +BOX +creaImageIO:ImagesChooserDialogBox:Box03 +ISEXEC:FALSE +40.127497:79.954414:-900.000000 +111.302497:69.954414:-900.000000 +FIN_BOX +BOX +creaMaracasVisu:ViewerNV:Box04 +ISEXEC:TRUE +-54.555361:-9.017415:-900.000000 +6.084639:-19.017415:-900.000000 +FIN_BOX +CONNECTIONS:4 +CONNECTION +Box01:Out:Box00:X +NumberOfControlPoints:0 +CONNECTION +Box02:Out:Box00:Y +NumberOfControlPoints:0 +CONNECTION +Box03:Out:Box00:Z +NumberOfControlPoints:0 +CONNECTION +Box01:Out:Box04:In +NumberOfControlPoints:0 +APP_END diff --git a/bbtk_creaVtk_PKG/bbs/appli/exampleImageDataStructuresPoints.bbs b/bbtk_creaVtk_PKG/bbs/appli/exampleImageDataStructuresPoints.bbs new file mode 100644 index 0000000..e06fdce --- /dev/null +++ b/bbtk_creaVtk_PKG/bbs/appli/exampleImageDataStructuresPoints.bbs @@ -0,0 +1,42 @@ +# ---------------------------------- +# - BBTKGEditor v 1.4 BBS BlackBox Script +# - /home/ctorres/Documents/creatis/creaVtk/bbtk_creaVtk_PKG/bbs/appli/exampleImageDataStructuresPoints.bbs +# ---------------------------------- + +# BBTK GEditor Script +# ---------------------- + +include std +include itkvtk +include creaVtk +include creaImageIO +include creaMaracasVisu + +author "Author ??" +description "Description ??" +category "" + +new ImageDataStructuredPoints Box00 + +new ImagesChooserDialogBox Box01 + +new ImagesChooserDialogBox Box02 + +new ImagesChooserDialogBox Box03 + +new ViewerNV Box04 + + +connect Box01.Out Box00.X + +connect Box02.Out Box00.Y + +connect Box03.Out Box00.Z + +connect Box01.Out Box04.In + + + +# Complex input ports +exec Box00 +exec Box04 diff --git a/bbtk_creaVtk_PKG/src/bbcreaVtkImageDataStructuredPoints.cxx b/bbtk_creaVtk_PKG/src/bbcreaVtkImageDataStructuredPoints.cxx new file mode 100644 index 0000000..20c25c7 --- /dev/null +++ b/bbtk_creaVtk_PKG/src/bbcreaVtkImageDataStructuredPoints.cxx @@ -0,0 +1,50 @@ +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +#include "bbcreaVtkImageDataStructuredPoints.h" +#include "bbcreaVtkPackage.h" +namespace bbcreaVtk +{ + +BBTK_ADD_BLACK_BOX_TO_PACKAGE(creaVtk,ImageDataStructuredPoints) +BBTK_BLACK_BOX_IMPLEMENTATION(ImageDataStructuredPoints,bbtk::AtomicBlackBox); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void ImageDataStructuredPoints::Process() +{ + vtkImageData* imageX = bbGetInputX(); + vtkImageData* imageY = bbGetInputY(); + vtkImageData* imageZ = bbGetInputZ(); + + vtkImageDataStrucPoints idsp; + + idsp.joinComponents(imageX, imageY, imageZ); + bbSetOutputImageEnsemble( idsp.getStructuredPoints() ); + +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void ImageDataStructuredPoints::bbUserSetDefaultValues() +{ + +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void ImageDataStructuredPoints::bbUserInitializeProcessing() +{ + +} +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +void ImageDataStructuredPoints::bbUserFinalizeProcessing() +{ + +} +} +// EO namespace bbcreaVtk + + diff --git a/bbtk_creaVtk_PKG/src/bbcreaVtkImageDataStructuredPoints.h b/bbtk_creaVtk_PKG/src/bbcreaVtkImageDataStructuredPoints.h new file mode 100644 index 0000000..93d6d40 --- /dev/null +++ b/bbtk_creaVtk_PKG/src/bbcreaVtkImageDataStructuredPoints.h @@ -0,0 +1,52 @@ +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +#ifndef __bbcreaVtkImageDataStructuredPoints_h_INCLUDED__ +#define __bbcreaVtkImageDataStructuredPoints_h_INCLUDED__ +#include "bbcreaVtk_EXPORT.h" +#include "bbtkAtomicBlackBox.h" +#include "iostream" +#include "vtkImageData.h" +#include "vtkStructuredPoints.h" +#include "vtkImageDataStrucPoints.h" + +namespace bbcreaVtk +{ + +class bbcreaVtk_EXPORT ImageDataStructuredPoints + : + public bbtk::AtomicBlackBox +{ + BBTK_BLACK_BOX_INTERFACE(ImageDataStructuredPoints,bbtk::AtomicBlackBox); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== + BBTK_DECLARE_INPUT(X, vtkImageData*); + BBTK_DECLARE_INPUT(Y, vtkImageData*); + BBTK_DECLARE_INPUT(Z, vtkImageData*); + BBTK_DECLARE_OUTPUT(ImageEnsemble, vtkStructuredPoints*); + BBTK_PROCESS(Process); + void Process(); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +}; + +BBTK_BEGIN_DESCRIBE_BLACK_BOX(ImageDataStructuredPoints,bbtk::AtomicBlackBox); +BBTK_NAME("ImageDataStructuredPoints"); +BBTK_AUTHOR("Carlos Torres"); +BBTK_DESCRIPTION("No Description."); +BBTK_CATEGORY("empty"); +BBTK_INPUT(ImageDataStructuredPoints,X,"Image X",vtkImageData*,""); +BBTK_INPUT(ImageDataStructuredPoints,Y,"Image Y",vtkImageData*,""); +BBTK_INPUT(ImageDataStructuredPoints,Z,"Image Z",vtkImageData*,""); +BBTK_OUTPUT(ImageDataStructuredPoints,ImageEnsemble,"Image Ensemble",vtkStructuredPoints*,""); +BBTK_END_DESCRIBE_BLACK_BOX(ImageDataStructuredPoints); +//===== +// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost) +//===== +} +// EO namespace bbcreaVtk + +#endif // __bbcreaVtkImageDataStructuredPoints_h_INCLUDED__ + diff --git a/lib/creaVtk/vtkImageDataStrucPoints.cpp b/lib/creaVtk/vtkImageDataStrucPoints.cpp new file mode 100644 index 0000000..69ac58a --- /dev/null +++ b/lib/creaVtk/vtkImageDataStrucPoints.cpp @@ -0,0 +1,100 @@ +/* +# --------------------------------------------------------------------- +# +# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image +# pour la Sante) +# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton +# Previous Authors : Laurent Guigues, Jean-Pierre Roux +# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil +# +# This software is governed by the CeCILL-B license under French law and +# abiding by the rules of distribution of free software. You can use, +# modify and/ or redistribute the software under the terms of the CeCILL-B +# license as circulated by CEA, CNRS and INRIA at the following URL +# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html +# or in the file LICENSE.txt. +# +# As a counterpart to the access to the source code and rights to copy, +# modify and redistribute granted by the license, users are provided only +# with a limited warranty and the software's author, the holder of the +# economic rights, and the successive licensors have only limited +# liability. +# +# The fact that you are presently reading this means that you have had +# knowledge of the CeCILL-B license and that you accept its terms. +# ------------------------------------------------------------------------ +*/ + +#include "vtkImageDataStrucPoints.h" + +vtkImageDataStrucPoints::vtkImageDataStrucPoints() +{ +} + +vtkImageDataStrucPoints::~vtkImageDataStrucPoints() +{ +} +void vtkImageDataStrucPoints::joinComponents(vtkImageData* imageX, vtkImageData* imageY, vtkImageData* imageZ) +{ + imageY->Modified(); + imageY->Update(); + int ext[6]; + imageY->GetWholeExtent(ext); + int dim[3]; + double spc[3];; + dim[0]=ext[1]-ext[0]+1; + dim[1]=ext[3]-ext[2]+1; + dim[2]=ext[5]-ext[4]+1; + std::cout<<"dim "<< dim[0] <<" "<< dim[1] <<" "<< dim[2] <GetSpacing(spc); + + vtkDoubleArray *arrayX; + vtkDoubleArray *arrayY; + vtkDoubleArray *arrayZ; + + unsigned char *ptrUCharX = (unsigned char *)imageX->GetScalarPointer(); + unsigned char *ptrUCharY = (unsigned char *)imageY->GetScalarPointer(); + unsigned char *ptrUCharZ = (unsigned char *)imageZ->GetScalarPointer(); + + long int sizeimage = dim[0]*dim[1]*dim[2]; + + vtkDoubleArray *array = vtkDoubleArray::New(); + array->SetNumberOfTuples(sizeimage); + array->SetNumberOfComponents(3); + array->Allocate(sizeimage*3, 100 ); // ??? + array->SetName("velocity"); + + double vx; + double vy; + double vz; + + int i; + for( i = 0 ; i < sizeimage ; i++ ) + { + vx = *ptrUCharX; + vy = *ptrUCharY; + vz = *ptrUCharZ; + ptrUCharX++; + ptrUCharY++; + ptrUCharZ++; + array->SetTuple3(i,vx, vy , vz ); + } // for i + + + + _structuredPoints = vtkStructuredPoints::New(); + _structuredPoints->SetDimensions(dim[0], dim[1], dim[2]); + _structuredPoints->SetSpacing(spc); + _structuredPoints->SetScalarTypeToFloat(); + _structuredPoints->SetNumberOfScalarComponents(1); + _structuredPoints->GetPointData()->SetVectors(array); + _structuredPoints->GetPointData()->SetNumberOfTuples(sizeimage); + +} + +vtkStructuredPoints* vtkImageDataStrucPoints::getStructuredPoints() +{ + return _structuredPoints; +} + diff --git a/lib/creaVtk/vtkImageDataStrucPoints.h b/lib/creaVtk/vtkImageDataStrucPoints.h new file mode 100644 index 0000000..d5dd52c --- /dev/null +++ b/lib/creaVtk/vtkImageDataStrucPoints.h @@ -0,0 +1,54 @@ +/* +# --------------------------------------------------------------------- +# +# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image +# pour la Sante) +# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton +# Previous Authors : Laurent Guigues, Jean-Pierre Roux +# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil +# +# This software is governed by the CeCILL-B license under French law and +# abiding by the rules of distribution of free software. You can use, +# modify and/ or redistribute the software under the terms of the CeCILL-B +# license as circulated by CEA, CNRS and INRIA at the following URL +# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html +# or in the file LICENSE.txt. +# +# As a counterpart to the access to the source code and rights to copy, +# modify and redistribute granted by the license, users are provided only +# with a limited warranty and the software's author, the holder of the +# economic rights, and the successive licensors have only limited +# liability. +# +# The fact that you are presently reading this means that you have had +# knowledge of the CeCILL-B license and that you accept its terms. +# ------------------------------------------------------------------------ +*/ + +#ifndef _VTKIMAGEDATASTRUCPOINTS_H_ +#define _VTKIMAGEDATASTRUCPOINTS_H_ +#include "vtkImageData.h" +#include "vtkStructuredPoints.h" +#include "vtkDoubleArray.h" +#include "vtkPointData.h" + + +class vtkImageDataStrucPoints +{ + +public : + vtkImageDataStrucPoints(); + ~vtkImageDataStrucPoints(); + void joinComponents(vtkImageData* imageX, vtkImageData* imageY, vtkImageData* imageZ); + vtkStructuredPoints* getStructuredPoints(); + + vtkStructuredPoints* _structuredPoints; + +protected: + +private: + +}; + +//-end of _VTKIMAGEDATASTRUCPOINTS_H_------------------------------------------------------ +#endif