/*========================================================================= Program: gdcm Module: $RCSfile: TestReadWriteReadCompare.cxx,v $ Language: C++ Date: $Date: 2008/04/10 12:15:34 $ Version: $Revision: 1.38 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #include "gdcmFile.h" #include "gdcmFileHelper.h" #include "gdcmDebug.h" #include "gdcmGlobal.h" #include "gdcmTS.h" #include // abs //Generated file: #include "gdcmDataImages.h" const unsigned int MAX_NUMBER_OF_DIFFERENCE = 10; int nb_of_success___; int nb_of_failure___; int nb_of_diffPM1___; static int CompareInternal(std::string const &filename, std::string const &output) { std::cout << "----------------------------------------------------------------------" << std::endl << " Testing: " << filename << std::endl; //////////////// Step 1 (see above description): GDCM_NAME_SPACE::File *file = GDCM_NAME_SPACE::File::New( ); file->SetFileName( filename ); file->Load (); if( !file->IsReadable() ) { std::cout << "Failed" << std::endl << "Test::TestReadWriteReadCompare: Image not gdcm compatible:" << filename << std::endl; file->Delete(); nb_of_failure___++; return 1; } std::cout << " step 1..."; //////////////// Step 2: GDCM_NAME_SPACE::FileHelper *filehelper = GDCM_NAME_SPACE::FileHelper::New( file ); int dataSize = filehelper->GetImageDataSize(); uint8_t *imageData = filehelper->GetImageData(); //EXTREMELY IMPORTANT // Sure, it is : It's up to the user to decide if he wants to // GetImageData or if he wants to GetImageDataRaw // (even if we do it by setting a flag, *he* will have to decide) //filehelper->SetImageData(imageData, dataSize); filehelper->SetContentType(GDCM_NAME_SPACE::UNMODIFIED_PIXELS_IMAGE); // pixels remain unimpared filehelper->SetWriteModeToRGB( ); filehelper->SetUserData(imageData,dataSize); // This one ensures the compression filehelper->Write( output ); std::cout << "2..."; //////////////// Step 3: GDCM_NAME_SPACE::File *fileout = GDCM_NAME_SPACE::File::New(); fileout->SetFileName( output ); fileout->Load(); if( !fileout->IsReadable() ) { std::cout << "Failed" << std::endl << "Test::TestReadWriteReadCompare: Could not parse the newly " << "written image:" << filename << std::endl; file->Delete(); filehelper->Delete(); fileout->Delete(); nb_of_failure___++; return 1; } GDCM_NAME_SPACE::FileHelper *reread = GDCM_NAME_SPACE::FileHelper::New( fileout ); std::cout << "3..."; // For the next step: int dataSizeWritten = reread->GetImageDataSize(); uint8_t *imageDataWritten = reread->GetImageData(); //////////////// Step 4: // Test the image size if (file->GetXSize() != reread->GetFile()->GetXSize() || file->GetYSize() != reread->GetFile()->GetYSize() || file->GetZSize() != reread->GetFile()->GetZSize()) { std::cout << "Failed" << std::endl << " Size differs: " << "X: " << file->GetXSize() << " # " << reread->GetFile()->GetXSize() << " | " << "Y: " << file->GetYSize() << " # " << reread->GetFile()->GetYSize() << " | " << "Z: " << file->GetZSize() << " # " << reread->GetFile()->GetZSize() << std::endl; file->Delete(); filehelper->Delete(); fileout->Delete(); reread->Delete(); nb_of_failure___++; return 1; } // Test the data size // beware of odd length Pixel Element! if (dataSize != dataSizeWritten) std::cout << std::endl << "dataSize:" << dataSize << " dataSizeWritten:" << dataSizeWritten << std::endl; int dataSizeFixed = dataSize - dataSize%2; int dataSizeWrittenFixed = dataSizeWritten - dataSizeWritten%2; if (dataSizeFixed != dataSizeWrittenFixed) { std::cout << "Failed" << std::endl << " Pixel areas lengths differ: " << dataSize << " # " << dataSizeWritten << std::endl; file->Delete(); filehelper->Delete(); fileout->Delete(); reread->Delete(); nb_of_failure___++; return 1; } // Test the data content unsigned int nbDiff = 0; if (memcmp(imageData, imageDataWritten, dataSizeFixed) !=0) { std::string PixelType = filehelper->GetFile()->GetPixelType(); std::string ts = filehelper->GetFile()->GetTransferSyntax(); for(int i1=0; i1 2) { nbDiff++; // break; // at debug time, keep line commented out; (uncommenting will save CPU time) } if (nbDiff!=0) { std::cout << std::endl << filename << " Failed : " << nbDiff/(file->GetBitsAllocated()/8) << " Pixels -amongst " << dataSizeFixed/(file->GetBitsAllocated()/8) << "- (" << PixelType << " bAlloc:" << file->GetBitsAllocated() << " bStored:" << file->GetBitsStored() << ") differ (as expanded in memory)." << std::endl << " compression : " << GDCM_NAME_SPACE::Global::GetTS()->GetValue(ts) << std::endl; std::cout << " list of the first " << MAX_NUMBER_OF_DIFFERENCE << " bytes differing (pos : original - written) :" << std::endl; for(unsigned int i=0, j1=0; i 2) { if (j1Delete(); filehelper->Delete(); fileout->Delete(); reread->Delete(); nb_of_failure___++; if (nbDiff/2 > 8 ) // last pixel of (DermaColorLossLess.dcm) is diferent. ?!? // I don't want it to break the testsuite return 1; else return 0; } else { std::cout << std::endl << filename << " : some pixels" << " (" << PixelType << " bAlloc:" << file->GetBitsAllocated() << " bStored:" << file->GetBitsStored() << ") differ +/-1 (as expanded in memory)." << std::endl << " compression : " << GDCM_NAME_SPACE::Global::GetTS()->GetValue(ts) << std::endl; std::cout << " list of the first " << MAX_NUMBER_OF_DIFFERENCE << " bytes differing (pos : original - written) :" << std::endl; for(unsigned int i=0, j=0; iDelete(); filehelper->Delete(); fileout->Delete(); reread->Delete(); return 0; } // ------------------------------------------------------------------------------------------- int TestReadWriteReadCompare(int argc, char *argv[]) { int result = 0; nb_of_success___ = 0; nb_of_failure___ = 0; nb_of_diffPM1___ = 0; if (argc == 4) GDCM_NAME_SPACE::Debug::DebugOn(); if (argc >= 3) { const std::string input = argv[1]; const std::string output = argv[2]; result += CompareInternal(input, output); } else if( argc > 4 || argc == 2 ) { std::cout << "Please read the manual" << std::endl; } else { std::cout<< "Test::TestReadWriteReadCompare: description " << std::endl; std::cout << " For all images in gdcmData (and not blacklisted in " "Test/CMakeLists.txt)" << std::endl; std::cout << " apply the following multistep test: " << std::endl; std::cout << " step 1: parse the image (as gdcmFile) and call" << " IsReadable(). " << std::endl; std::cout << " step 2: write the corresponding image in DICOM V3 " << "with explicit Value Representation " << std::endl << " in temporary file " << "TestReadWriteReadCompare.dcm." << std::endl; std::cout << " step 3: read the image written on step2 and call " << " IsReadable(). " << std::endl; std::cout << " step 4: compare (in memory with memcmp) that the two " << "images " << std::endl << " match (as expanded by gdcm)." << std::endl; int i = 0; int res =0; while( gdcmDataImages[i] != 0 ) { std::string filename = GDCM_DATA_ROOT; filename += "/"; filename += gdcmDataImages[i]; res = CompareInternal(filename, "TestReadWriteReadCompare.dcm"); if (res == 1) { std::cout << "=============================== Failure on: " << gdcmDataImages[i] << std::endl; result ++; } i ++; } } std::cout << "==================================" << std::endl; std::cout << "nb of success " << nb_of_success___ << std::endl; std::cout << "nb of failure " << nb_of_failure___ << std::endl; std::cout << "nb of diff+/-1 " << nb_of_diffPM1___ << std::endl; return result; }