/*========================================================================= Program: gdcm Module: $RCSfile: TestWriteSimple.cxx,v $ Language: C++ Date: $Date: 2007/09/28 14:20:22 $ Version: $Revision: 1.53 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ /** * Write a dicom file from nothing * The written image is 256x256, 8 bits, unsigned char * The image content is a horizontal grayscale from * */ #include "gdcmFile.h" #include "gdcmFileHelper.h" #include "gdcmDebug.h" #include "gdcmGlobal.h" #include "gdcmDictSet.h" #include #include typedef struct { int sizeX; // Size X of the image int sizeY; // Size Y of the image int sizeZ; // Size Z of the image int components; // Number of components for a pixel int componentSize; // Component size (in bits : 8, 16) // Bits Allocated int componentUse ; // Component size (in bits) // Bits Stored int sign; // Sign of components char writeMode; // Write mode // - 'a' : ACR // - 'e' : Explicit VR // - 'i' : Implicit VR } Image; Image Images [] = { // these ones are use to check further oddities. {63, 127, 1, 1, 16, 8, 0 ,'e'}, {63, 127, 1, 1, 16, 9, 0 ,'e'}, {63, 127, 1, 1, 16, 10, 0 ,'e'}, {63, 127, 1, 1, 16, 11, 0 ,'e'}, {63, 127, 1, 1, 16, 12, 0 ,'e'}, {63, 127, 1, 1, 16, 13, 0 ,'e'}, {63, 127, 1, 1, 16, 14, 0 ,'e'}, {63, 127, 1, 1, 16, 15, 0 ,'e'}, {63, 127, 1, 1, 16, 16, 0 ,'e'}, {63, 127, 1, 1, 32, 32, 0 ,'e'}, // Pixel VR should be OL? {128, 128, 1, 1, 8, 8, 0, 'e'}, {256, 128, 1, 1, 8, 8, 0, 'a'}, {128, 128, 1, 1, 8, 8, 0, 'i'}, {128, 128, 1, 1, 8, 8, 0, 'a'}, {256, 128, 1, 1, 8, 8, 0, 'i'}, {256, 128, 1, 1, 8, 8, 0, 'e'}, {128, 128, 1, 1, 16, 16, 0, 'e'}, {128, 256, 1, 1, 16, 16, 0, 'e'}, {128, 256, 1, 1, 8, 8, 0, 'e'}, {128, 256, 1, 1, 8, 8, 0, 'i'}, {128, 256, 1, 1, 8, 8, 0, 'a'}, {128, 256, 1, 1, 16, 16, 0, 'i'}, {128, 256, 1, 1, 16, 16, 0, 'i'}, {128, 256, 1, 1, 16, 16, 0, 'a'}, {128, 256, 1, 1, 16, 16, 0, 'a'}, {256, 128, 10, 1, 8, 8, 0, 'e'}, {256, 128, 10, 3, 8, 8, 0, 'e'}, {256, 128, 10, 3, 8, 8, 0, 'i'}, {256, 128, 10, 1, 8, 8, 0, 'i'}, {256, 128, 10, 1, 8, 8, 0, 'a'}, {256, 128, 10, 3, 8, 8, 0, 'a'}, {128, 128, 1, 1, 8, 8, 1, 'e'}, {128, 128, 1, 1, 8, 8, 1, 'i'}, {128, 128, 1, 1, 8, 8, 1, 'a'}, {256, 128, 1, 1, 8, 8, 1, 'e'}, {256, 128, 1, 1, 8, 8, 1, 'i'}, {256, 128, 1, 1, 8, 8, 1, 'a'}, {128, 256, 1, 1, 8, 8, 1, 'a'}, {128, 256, 1, 1, 8, 8, 1, 'e'}, {128, 256, 1, 1, 8, 8, 1, 'i'}, {128, 256, 1, 1, 16, 16, 1, 'e'}, {128, 256, 1, 1, 16, 16, 1, 'e'}, {128, 256, 1, 1, 16, 16, 1, 'i'}, {128, 256, 1, 1, 16, 16, 1, 'i'}, {128, 256, 1, 1, 16, 16, 1, 'a'}, {128, 256, 1, 1, 16, 16, 1, 'a'}, {256, 128, 10, 1, 8, 8, 1, 'e'}, {256, 128, 10, 1, 8, 8, 1, 'i'}, {256, 128, 10, 1, 8, 8, 1, 'a'}, {256, 128, 10, 3, 8, 8, 1, 'e'}, {256, 128, 10, 3, 8, 8, 1, 'i'}, {256, 128, 10, 3, 8, 8, 1, 'a'}, {0, 0, 1, 1, 8, 8, 0, 'i'} // to find the end }; const unsigned int MAX_NUMBER_OF_DIFFERENCE = 10; int WriteSimple(Image &img) { std::cout << "======================= WriteSimple =========(begin of processing current image)" << std::endl; std::ostringstream fileName; fileName.str(""); fileName << "TestWriteSimple"; // Step 1 : Create an empty FileHelper std::cout << " 1..."; GDCM_NAME_SPACE::FileHelper *fileH = GDCM_NAME_SPACE::FileHelper::New(); // Get the (empty) image header. GDCM_NAME_SPACE::File *fileToBuild = fileH->GetFile(); std::ostringstream str; // Set the image size str.str(""); str << img.sizeX; fileToBuild->InsertEntryString(str.str(),0x0028,0x0011,"US"); // Columns str.str(""); str << img.sizeY; fileToBuild->InsertEntryString(str.str(),0x0028,0x0010,"US"); // Rows if(img.sizeZ>1) { str.str(""); str << img.sizeZ; fileToBuild->InsertEntryString(str.str(),0x0028,0x0008, "IS"); // Number of Frames } fileName << "-" << img.sizeX << "-" << img.sizeY << "-" << img.sizeZ; // Set the pixel type str.str(""); str << img.componentSize; fileToBuild->InsertEntryString(str.str(),0x0028,0x0100,"US"); // Bits Allocated str.str(""); str << img.componentUse; fileToBuild->InsertEntryString(str.str(),0x0028,0x0101,"US"); // Bits Stored str.str(""); str << ( img.componentUse - 1 ); fileToBuild->InsertEntryString(str.str(),0x0028,0x0102,"US"); // High Bit // Set the pixel representation str.str(""); str << img.sign; fileToBuild->InsertEntryString(str.str(),0x0028,0x0103,"US"); // Pixel Representation fileName << "-" << img.componentSize; if(img.sign == 0) fileName << "U"; else fileName << "S"; fileName << "-" << img.componentSize << "-" << img.componentUse; fileToBuild->InsertEntryString("0",0x0008,0x0000,"UL"); // Should be removed // except for ACR switch (img.writeMode) { case 'a' : fileName << ".ACR"; break; case 'e' : fileName << ".EXPL"; break; case 'i' : fileName << ".IMPL"; break; } if(img.componentSize == 32) { // Create a Private DataElement; VR =OL fileToBuild->InsertEntryString("gdcm test OL",0x0009,0x0010,"LO"); uint32_t binArea[4]; binArea[0] = 0x01234567; binArea[1] = 0x89abcdef; binArea[2] = 0x2468ace0; binArea[2] = 0xfdb97531; fileToBuild->InsertEntryBinArea((uint8_t *)binArea,16,0x0009,0x0100,"OL"); } std::cout << "[" << fileName.str() << "]..."; // Set the samples per pixel str.str(""); str << img.components; fileToBuild->InsertEntryString(str.str(),0x0028,0x0002,"US"); // Samples per Pixel // Step 2 : Create the output image std::cout << "2..."; if( img.componentSize%8 > 0 ) { img.componentSize += 8-img.componentSize%8; } size_t size = img.sizeX * img.sizeY * img.sizeZ * img.components * img.componentSize / 8; unsigned char *imageData = new unsigned char[size]; // FIXME : find a better heuristic to create the image unsigned char *tmp = imageData; for(int k=0;k8 ) { *(tmp+1) = (unsigned char)(j/256); } tmp += img.componentSize/8; } } } } // Step 3 : Set the image Pixel Data std::cout << "3..."; fileH->SetImageData(imageData,size); // Step 4 : Set the writting mode and write the image fileH->SetWriteModeToRaw(); std::cout << "4'..."; switch (img.writeMode) { case 'a' : // Write an ACR file fileH->SetWriteTypeToAcr(); break; case 'e' : // Write a DICOM Explicit VR file fileH->SetWriteTypeToDcmExplVR(); break; case 'i' : // Write a DICOM Implicit VR file fileH->SetWriteTypeToDcmImplVR(); break; default : std::cout << "Failed for [" << fileName.str() << "]\n" << " Write mode '"<Delete(); delete[] imageData; return 1; } std::cout << std::endl; //fileToBuild->Print(); if( !fileH->Write(fileName.str()) ) { std::cout << "Failed for [" << fileName.str() << "]\n" << " File is unwrittable" << std::endl; fileH->Delete(); delete[] imageData; return 1; } // Step 5 : Read the written image std::cout << "5..." << std::endl; // old form. //GDCM_NAME_SPACE::FileHelper *reread = new GDCM_NAME_SPACE::FileHelper( fileName.str() ); // Better use : GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New( ); f->SetLoadMode(GDCM_NAME_SPACE::LD_ALL); f->SetFileName( fileName.str() ); //reread->SetFileName( fileName.str() ); //reread->SetLoadMode(GDCM_NAME_SPACE::LD_ALL); // Load everything // Possible values are // GDCM_NAME_SPACE::LD_ALL, // GDCM_NAME_SPACE::LD_NOSEQ, // GDCM_NAME_SPACE::LD_NOSHADOW, // GDCM_NAME_SPACE::LD_NOSEQ|GDCM_NAME_SPACE::LD_NOSHADOW, // GDCM_NAME_SPACE::LD_NOSHADOWSEQ f->Load(); // reread->Load(); GDCM_NAME_SPACE::FileHelper *reread = GDCM_NAME_SPACE::FileHelper::New( f ); //reread->Print(); if( !reread->GetFile()->IsReadable() ) { std::cerr << "Failed" << std::endl << "Could not read written image : " << fileName.str() << std::endl; fileToBuild->Delete(); fileH->Delete(); reread->Delete(); delete[] imageData; return 1; } // Step 6 : Compare to the written image std::cout << "6..." << std::endl; size_t dataSizeWritten = reread->GetImageDataSize(); uint8_t *imageDataWritten = reread->GetImageData(); // Test the image write mode if (reread->GetFile()->GetFileType() != fileH->GetWriteType()) { std::cout << "Failed" << std::endl << " File type differ: " << fileH->GetWriteType() << " # " << reread->GetFile()->GetFileType() << std::endl; fileToBuild->Delete(); fileH->Delete(); reread->Delete(); delete[] imageData; return 1; } std::cout << "6.1..." << std::endl; // Test the image size if (fileToBuild->GetXSize() != reread->GetFile()->GetXSize() || fileToBuild->GetYSize() != reread->GetFile()->GetYSize() || fileToBuild->GetZSize() != reread->GetFile()->GetZSize()) { std::cout << "Failed for [" << fileName.str() << "]" << std::endl << " X Size differs: " << "X: " << fileToBuild->GetXSize() << " # " << reread->GetFile()->GetXSize() << " | " << "Y: " << fileToBuild->GetYSize() << " # " << reread->GetFile()->GetYSize() << " | " << "Z: " << fileToBuild->GetZSize() << " # " << reread->GetFile()->GetZSize() << std::endl; fileToBuild->Delete(); fileH->Delete(); reread->Delete(); delete[] imageData; return 1; } std::cout << "6.2..." << std::endl; // Test the data size if (size != dataSizeWritten) { std::cout << "Failed" << std::endl << " Pixel areas lengths differ: " << size << " # " << dataSizeWritten << std::endl; fileToBuild->Delete(); fileH->Delete(); reread->Delete(); delete[] imageData; return 1; } std::cout << "6.3..." << std::endl; // Test the data content if ( memcmp(imageData, imageDataWritten, size) !=0 ) { std::cout << fileName.str() << " Failed " << std::endl << " Pixel differ (as expanded in memory)." << std::endl; std::cout << " list of the first " << MAX_NUMBER_OF_DIFFERENCE << " pixels differing (pos : test - ref) :" << std::endl; unsigned int i; unsigned int j; for(i=0, j=0;iDelete(); fileH->Delete(); reread->Delete(); delete[] imageData; return 1; } std::cout << "======================= OK" << std::endl; fileH->Delete(); reread->Delete(); delete[] imageData; return 0; } int TestWriteSimple(int argc, char *argv[]) { if (argc < 1) { std::cerr << "usage: \n" << argv[0] << " (without parameters) " << std::endl << std::endl; return 1; } // GDCM_NAME_SPACE::Debug::DebugOn(); int ret=0; int i=0; while( Images[i].sizeX>0 && Images[i].sizeY>0 ) { std::cout << "Test n :" << i <