/*========================================================================= Program: gdcm Module: $RCSfile: gdcmDocEntry.cxx,v $ Language: C++ Date: $Date: 2007/10/30 09:14:42 $ Version: $Revision: 1.96 $ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de l'Image). All rights reserved. See Doc/License.txt or http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #include "gdcmDocEntry.h" #include "gdcmDataEntry.h" #include "gdcmTS.h" #include "gdcmVR.h" #include "gdcmGlobal.h" #include "gdcmUtil.h" #include "gdcmDebug.h" #include "gdcmDictSet.h" #include // for std::ios::left, ... #include namespace GDCM_NAME_SPACE { //----------------------------------------------------------------------------- // Constructor / Destructor /** * \brief Constructor from a given DocEntry * @param group Group number * @param elem Element number * @param vr VR */ DocEntry::DocEntry(uint16_t group, uint16_t elem, VRKey const &vr) { ImplicitVR = false; DicomDict = 0; Offset = 0 ; // To avoid further misprinting // init some variables ReadLength = 0; Length = 0; VR = vr; Key.SetGroupElem(group,elem); } /** * \brief Destructor from a given DocEntry */ DocEntry::~DocEntry() { if (DicomDict) { gdcmAssertMacro(DicomDict); DicomDict->Unregister(); } } //----------------------------------------------------------------------------- // Public /** * \brief Writes the common part of any DataEntry, SeqEntry * @param fp already open ofstream pointer * @param filetype type of the file (ACR, ImplicitVR, ExplicitVR, JPEG, JPEG2000...) */ void DocEntry::WriteContent(std::ofstream *fp, FileType filetype, bool insideMetaElements, bool insideSequence) { uint32_t ffff = 0xffffffff; uint16_t group = GetGroup(); ///\todo allow skipping Shadow groups VRKey vr = GetVR(); uint16_t elem = GetElement(); uint32_t lgth = GetLength(); if ( group == 0xfffe && elem == 0x0000 ) { // Fix in order to make some MR PHILIPS images e-film readable // see gdcmData/gdcm-MR-PHILIPS-16-Multi-Seq.dcm: // we just *always* ignore spurious fffe|0000 tag ! return; } // // ----------- Writes the common part // // To avoid gdcm to propagate oddities. // --> Don't forget to *write* an even length value if (lgth%2) lgth ++; // ----------- Writes the common part : the Tag binary_write( *fp, group); //group number binary_write( *fp, elem); //element number // Dicom V3 group 0x0002 is *always* Explicit VR ! if ( filetype == ExplicitVR || filetype == JPEG || filetype == JPEG2000 || (group == 0x0002 && insideMetaElements) ) { // ----------- Writes the common part : the VR + the length // Special case of delimiters: if (group == 0xfffe) { // Delimiters have NO Value Representation // Hence we skip writing the VR. // // In order to avoid further troubles, we choose to write them // as 'no-length' Item Delimitors (we pad by writing 0xffffffff) // We shall force the end of a given SeqItem by writting // a Item Delimitation Item (fffe, e00d) uint32_t ff = 0xffffffff; binary_write(*fp, ff); return; } uint16_t zero = 0; uint16_t shortLgr = (uint16_t)lgth; if( IsVRUnknown() ) { // if VR was not set by user, we set it to "UN" SetVR("UN"); vr=GetVR(); } //{ binary_write(*fp, vr.str()); // See PS 3.5-2004 page 33, 36 if ( (vr == "SQ") || (vr == "OB") || (vr == "OW") || (vr == "OL") || (vr == "OF") || (vr == "UN") || (vr == "UT") ) { binary_write(*fp, zero); if ( (filetype == JPEG || filetype == JPEG2000) && group == 0x7fe0 && elem == 0x0010 && !insideSequence) { // Only the 'true' Pixel Element may be compressed (hope so!) binary_write(*fp, ffff); } else if (vr == "SQ") { // we set SQ length to ffffffff // and we shall write a Sequence Delimitor Item // at the end of the Sequence! binary_write(*fp, ffff); } else { binary_write(*fp, lgth); } } else { binary_write(*fp, shortLgr); } //} } else // IMPLICIT VR { // ----------- Writes the common part : the VR if (vr == "SQ") { binary_write(*fp, ffff); } else { binary_write(*fp, lgth); } } } /// \brief Returns the 'Name' '(e.g. "Patient's Name") found in the Dicom /// Dictionnary of the current Dicom Header Entry std::string const &DocEntry::GetName() { if (DicomDict == 0) DicomDict = Global::GetDicts()->GetDefaultPubDict()->GetEntry(Key[0],Key[1]); if (DicomDict == 0) return GDCM_UNKNOWN; else { DicomDict->Register(); return DicomDict->GetName(); } } /// \brief Returns the 'Value Multiplicity' (e.g. "1", "6", "1-n", "3-n"), /// found in the Dicom entry or in the Dicom Dictionnary /// of the current Dicom entry std::string const &DocEntry::GetVM() { if (DicomDict == 0) DicomDict = Global::GetDicts()->GetDefaultPubDict()->GetEntry(Key[0],Key[1]); if (DicomDict == 0) return GDCM_UNKNOWN; else { DicomDict->Register(); return DicomDict->GetVM(); } } /** * \brief Gets the full length of the elementary DocEntry (not only value * length) depending on the VR. */ uint32_t DocEntry::GetFullLength() { uint32_t l = GetReadLength(); if ( IsImplicitVR() ) { l = l + 8; // 2 (gr) + 2 (el) + 4 (lgth) } else { if ( GetVR()=="OB" || GetVR()=="OW" || GetVR()=="OL" || GetVR()=="SQ" ) { l = l + 12; // 2 (gr) + 2 (el) + 2 (vr) + 2 (unused) + 4 (lgth) } else { l = l + 8; // 2 (gr) + 2 (el) + 2 (vr) + 2 (lgth) } } return l; } /** * \brief Copies all the attributes from an other DocEntry * @param doc entry to copy from */ void DocEntry::Copy(DocEntry *doc) { Length = doc->Length; ReadLength = doc->ReadLength; ImplicitVR = doc->ImplicitVR; Offset = doc->Offset; } //----------------------------------------------------------------------------- // Protected //----------------------------------------------------------------------------- // Private //----------------------------------------------------------------------------- // Print /** * \brief Prints the common part (vr [length offset] name) of DataEntry, SeqEntry * @param os ostream we want to print in * @param indent Indentation string to be prepended during printing */ void DocEntry::Print(std::ostream &os, std::string const & ) { size_t o; std::string st; TSKey v; std::string d2; VRKey vr; std::ostringstream s; uint32_t lgth; o = GetOffset(); vr = GetVR(); if ( vr == GDCM_VRUNKNOWN ) vr = " "; s << DictEntry::TranslateToKey(GetGroup(),GetElement()); if (PrintLevel >= 2) { s << " lg : "; lgth = GetReadLength(); // ReadLength, as opposed to (usable) Length if (lgth == 0xffffffff) { st = " ffff "; s.setf(std::ios::left); s << std::setw(4); s << " x(ffff) "; s.setf(std::ios::left); s << std::setw(8) << "-1"; } else { st = Util::Format("x(%x)",lgth); // we may keep it s.setf(std::ios::left); s << std::setw(11-st.size()) << " "; s << st << " "; s.setf(std::ios::left); s << std::setw(8) << lgth; } s << " Off.: "; st = Util::Format("x(%x)",o); // we may keep it s << std::setw(11-st.size()) << " "; s << st << " "; s << std::setw(8) << o; } //if (PrintLevel >= 1) s << " "; s << "[" << vr << "] "; std::string name; uint16_t e = GetElement(); if ( e == 0x0000 ) name = "Group Length"; else if ( GetGroup()%2 == 1 ) { if ( e >= 0x0010 && e <= 0x00ff ) name = "Private Creator"; else if (e == 0x0001) name = "Private Group Length To End"; } else { name = GetName(); // prevent Print from any CR at end of name (hope it's enought!) if (name[name.length()-1] == 0x0d || name[name.length()-1] == 0x0a) { name.replace(name.length()-1, 1, 1, ' '); } } if (PrintLevel >= 1) { s.setf(std::ios::left); s << std::setw(66-name.length()) << " "; } s << "[" << name << "]"; os << s.str(); } //----------------------------------------------------------------------------- } // end namespace gdcm