Program: gdcm
Module: $RCSfile: RawToDicomStack.cxx,v $
Language: C++
- Date: $Date: 2009/01/14 14:07:40 $
- Version: $Revision: 1.3 $
+ Date: $Date: 2009/01/19 17:05:13 $
+ Version: $Revision: 1.4 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
typedef float * PF32;
typedef double * PD64;
-#define CRR(t1,t2) { for(int i=0;i<nY;i++) \
- for(int j=0;j<nX;j++) \
- for(int k=0;k<samplesPerPixel;k++) {\
- *((t2)planePixelsOut + i*nX +j+k) = *(((t1)pixels)+ nbPlanes*nX*nY + i*nX +j+k);\
- } \
- }
+#define CRR(t1,t2) { for(int i=0;i<nY;i++) \
+ for(int j=0;j<nX;j++) \
+ for(int k=0;k<samplesPerPixel;k++) {\
+ *((t2)planePixelsOut + i*nX +j+k) = *(((t1)pixels)+ nbPlanes*nX*nY + i*nX +j+k);\
+ } \
+ }
#define CFR(PPt) switch ( pixelTypeOutCode ) { \
case -8 : CRR(PPt,PS8); break; \
for( i = 0; i < RawSize / 2; i++ )
{
im16[i]= (im16[i] >> 8) | (im16[i] << 8 );
- }
+ }
}
else if ( pixelSize == 4 )
{
" lines=nb of Lines, ",
" [frames = nb of Frames] //defaulted to 1 ",
" pixeltype={8U|8S|16U|16S|32U|32S|32F|64D} ",
- " pixeltypeout={8U|8S|16U|16S|32U|32S} ",
+ " pixeltypeout={8U|8S|16U|16S|32U|32S} ",
" [{b|l}] b:BigEndian,l:LittleEndian default : l ",
" [samples = {1|3}} //(1:Gray,3:RGB) defaulted to 1",
" [monochrome1] ",
" [studyid = ] [patientname = Patient's name] ",
" [debug] ",
" ",
- " monochrome1 = user wants MONOCHROME1 photom. interp. (0=white) ",
+ " monochrome1 = user wants MONOCHROME1 photom. interp. (0=white) ",
" studyUID : *aware* user wants to add the serie ",
" to an already existing study ",
" debug : developper wants to run the program in 'debug mode' ",
int l = am->ArgMgrDefined("l");
char *pixelType = am->ArgMgrWantString("pixeltype", usage);
-
const char *pixelTypeOut = am->ArgMgrGetString("pixeltypeout", pixelType);
bool monochrome1 = ( 0 != am->ArgMgrDefined("monochrome1") );
// ----------- End Arguments Manager ---------
/// \TODO Deal with all the images of a directory
-
- // Read the Raw file
+
+ // Read the Raw file
std::ifstream *Fp = new std::ifstream(inputFileName, std::ios::in | std::ios::binary);
if ( ! *Fp )
- {
+ {
std::cout << "Cannot open file: " << inputFileName;
delete Fp;
Fp = 0;
return 0;
- }
+ }
bool bigEndian = GDCM_NAME_SPACE::Util::IsCurrentProcessorBigEndian();
{
pixelSize = 1;
pixelSign = 0;
- pixelTypeCode = 8;
+ pixelTypeCode = 8;
}
else if (strPixelType == "16S")
{
{
pixelSize = 4;
pixelSign = 1;
- pixelTypeCode = -32;
+ pixelTypeCode = -32;
}
else if (strPixelType == "32U")
{
pixelSize = 4;
pixelSign = 0;
- pixelTypeCode = 32;
+ pixelTypeCode = 32;
}
else if (strPixelType == "32F")
{
pixelSize = 4;
pixelSign = 0;
- pixelTypeCode = 33;
- }
-
+ pixelTypeCode = 33;
+ }
+
else if (strPixelType == "64D")
{
pixelSize = 8;
pixelSign = 0;
- pixelTypeCode = 64;
+ pixelTypeCode = 64;
}
else
{
std::cout << "Wrong 'pixeltypeout' (" << strPixelTypeOut << ")" << std::endl;
return 1;
}
-
+
std::string strStudyUID;
std::string strSerieUID;
int dataSizeIn = nX*nY*samplesPerPixel*pixelSize*nZ;
uint8_t *pixels = new uint8_t[dataSizeIn];
- uint8_t *planePixelsOut = new uint8_t[singlePlaneDataSize];
-
+ uint8_t *planePixelsOut = new uint8_t[singlePlaneDataSize];
+
Fp->read((char*)pixels, (size_t)dataSizeIn);
if ( pixelSize !=1 && ( (l && bigEndian) || (b && ! bigEndian) ) )
{
- ConvertSwapZone(pixelSize, pixels, dataSizeIn);
+ ConvertSwapZone(pixelSize, pixels, dataSizeIn);
}
// iterate on the planes.
char outputFileName[200];
-
+
for(int nbPlanes=0; nbPlanes<nZ; nbPlanes++)
{
// Copy (and convert) pixels of a single plane
- switch ( pixelTypeCode )
+ switch ( pixelTypeCode )
{
case 8 : CFR(PU8); break;
case -8 : CFR(PS8); break;
case -32 : CFR(PS32); break;
case 32 : CFR(PU32); break;
case 33 : CFR(PF32); break;
- case 64 : CFR(PD64); break;
+ case 64 : CFR(PD64); break;
}
// Create an empty FileHelper
str.str("");
str << pixelSign;
fileToBuild->InsertEntryString(str.str(),0x0028,0x0103, "US"); // Pixel Representation
-
+
// If you deal with a Serie of images, as slices of a volume,
// it up to you to tell gdcm, for each image, what are the values of :
//
// 0020 0037 DS 6 Image Orientation (Patient)
str.str("");
- str << "0.0 \\ 0.0 \\" << nbPlanes;
+ str << "0.0 \\ 0.0 \\" << nbPlanes;
fileToBuild->InsertEntryString(str.str(),0x0020,0x0032, "DS");
str.str("");