Program: gdcm
Module: $RCSfile: SplitIntoXCoherentDirectories.cxx,v $
Language: C++
- Date: $Date: 2007/10/24 08:03:10 $
- Version: $Revision: 1.3 $
+ Date: $Date: 2009/05/28 15:44:34 $
+ Version: $Revision: 1.4 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
START_USAGE(usage)
"\n exXCoherentFileSet :\n ",
"Shows the various 'XCoherent' Filesets within a directory ",
- "Optionaly copis the images in a Directories tree ",
+ "Optionaly copies the images in a Directories tree ",
"usage: exXCoherentFileSet {dirin=inputDirectoryName} ",
" dirout=outputDirectoryName ",
" { tag=group-elem | pos | ori } [sort] ",
int loadMode;
int maxSize;
-
+
const char *dirName = am->ArgMgrGetString("dirin");
if (dirName == 0)
{
bool write = ( 0 != am->ArgMgrDefined("write") );
bool verbose = ( 0 != am->ArgMgrDefined("verbose") );
bool tag = ( 0 != am->ArgMgrDefined("tag") );
-
+
if( copy && write )
{
std::cout << "COPY and WRITE are mutually exclusive" << std::endl;
delete am;
- return 0;
- }
+ return 0;
+ }
if( (tag && (pos || ori)) || (pos && (tag || ori)) || (ori && (tag || pos)) )
{
delete am; // ------ we don't need Arguments Manager any longer ------
-
+
GDCM_NAME_SPACE::SerieHelper *s;
s = GDCM_NAME_SPACE::SerieHelper::New();
-
+
+ s->SetLoadMode(GDCM_NAME_SPACE::LD_ALL); // Load everything for each File
+ s->SetDirectory(dirName, true); // true : recursive exploration
+
GDCM_NAME_SPACE::File *f;
GDCM_NAME_SPACE::DirList dirlist(dirName, true); // recursive exploration
if (write) {
loadMode = GDCM_NAME_SPACE::LD_ALL; // load any DataElement
- maxSize = 0x7fff; // load any length
+ maxSize = 0x7fff; // load any length
} else {
loadMode = GDCM_NAME_SPACE::LD_NOSEQ | GDCM_NAME_SPACE::LD_NOSHADOW ;
maxSize = 0x0100;
// For all the Single SerieUID Files Sets of the GDCM_NAME_SPACE::Serie
- //GDCM_NAME_SPACE::FileList *l = s->GetFirstSingleSerieUIDFileSet();//===> Ignore 'Serie UID"
+ // GDCM_NAME_SPACE::FileList *l = s->GetFirstSingleSerieUIDFileSet();
+
+ l = s->GetFirstSingleSerieUIDFileSet();
+ if (l == NULL) {
+ std::cout << "No Serie found ?!?" << std::endl;
+ exit (0);
+ }
GDCM_NAME_SPACE::XCoherentFileSetmap xcm;
std::string lastFilename;
std::string rep("_");
int controlCount = 0;
-
+
// 'Study Instance UID'
// The user is allowed to create his own Study,
// keeping the same 'Study Instance UID' for various images
strStudyUID = studyUID;
}
-// while (l) // for each 'Single SerieUID FileSet' //===> Ignore 'Serie UID"
-// {
+ while (l) // for each 'Single SerieUID FileSet' //===> Ignore 'Serie UID"
+ {
+ currentSerieWriteDir = "";
nbFiles = l->size() ;
if ( l->size() > 2 ) // ignore a Directory with less than 2 images.
// Why not ? Just an example, for testing!
{
// Just not to make too many modif in the code
- serieUID = "SingleSerie"; //s->GetCurrentSerieUIDFileSetUID();
+ //serieUID = "SingleSerie"; // s->GetCurrentSerieUIDFileSetUID();
+ serieUID = s->GetCurrentSerieUIDFileSetUID();
+
GDCM_NAME_SPACE::Util::ReplaceSpecChar(serieUID, rep);
-
+
// --- for write
if (write || copy)
{
<< serieUID
<< "] " << nbFiles << " long" << std::endl;
std::cout << "-----------------------------------" << std::endl;
-
-GDCM_NAME_SPACE::Debug::DebugOn();
-
if (ori)
xcm = s->SplitOnOrientation(l);
else if (pos)
xcm = s->SplitOnPosition(l);
else if (groupelem != 0) {
-
- std:: cout << GDCM_NAME_SPACE::Global::GetDicts()->GetDefaultPubDict()->GetEntry(groupelem[0],groupelem[1])->GetName() << std::endl;
+ // Crashes if DataElement not found
+ //std:: cout << GDCM_NAME_SPACE::Global::GetDicts()->GetDefaultPubDict()->GetEntry(groupelem[0],groupelem[1])->GetName() << std::endl;
xcm = s->SplitOnTagValue(l, groupelem[0],groupelem[1] );
}
{
xCoherentName = (*i).first;
if (verbose)
- std::cout << "xCoherentName = " << xCoherentName << std::endl;
+ std::cout << "==========================================xCoherentName = " << xCoherentName << std::endl;
GDCM_NAME_SPACE::Util::ReplaceSpecChar(xCoherentName, rep);
// --- for write
if (write || copy)
// (eg:MIP views) don't have 'Position', now considered as mandatory
// --> Activated on user demand.
- if (sort) {
+ if (sort) {
s->OrderFileList((*i).second); // sort the XCoherent Fileset
std::cout << "ZSpacing for the file set " << s->GetZSpacing()
<< std::endl;
- }
+ }
std::string strSerieUID = GDCM_NAME_SPACE::Util::CreateUniqueUID();
{
controlCount ++;
fileName = (*it2)->GetFileName();
- std::cout << " " << fileName << std::endl;
-
// --- for write
lastFilename = GDCM_NAME_SPACE::Util::GetName( fileName );
- filenameout = xCoherentWriteDir + GDCM_NAME_SPACE::GDCM_FILESEPARATOR+ lastFilename;
+ filenameout = xCoherentWriteDir + GDCM_NAME_SPACE::GDCM_FILESEPARATOR+ lastFilename;
if (write)
{
fh = GDCM_NAME_SPACE::FileHelper::New( (*it2) );
unsigned int dataSize = fh->GetImageDataRawSize();
uint8_t *imageData = fh->GetImageDataRaw();// somewhat important : Loads the Pixels in memory !
if (!imageData)
- std::cout << "fail to read [" << (*it2)->GetFileName() << std::endl;
+ std::cout << "fail to read [" << (*it2)->GetFileName() << std::endl;
fh->SetWriteTypeToDcmExplVR();
fh->SetContentType(GDCM_NAME_SPACE::UNMODIFIED_PIXELS_IMAGE);
if (!fh->Write(filenameout))
if (verbose)
std::cout << "3 " << systemCommand << std::endl;
}
- std::cout << std::endl;
}
+ std::cout << std::endl;
}
- // l = s->GetNextSingleSerieUIDFileSet(); //===> Ignore 'Serie UID"
+ l = s->GetNextSingleSerieUIDFileSet();
+ }
if ( controlCount == 0 )
std::cout << "No suitable file was found!" << std::endl;
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff