-
- // New filter to convert to binary image
- clitk::DicomRTStruct2ImageFilter filter;
- filter.SetCropMaskEnabled(args_info.crop_flag);
- filter.SetImageFilename(args_info.image_arg); // Used to get spacing + origin
- if (args_info.vtk_flag) {
- filter.SetWriteMesh(true);
- }
- if (args_info.roiName_given) {
- filter.SetROI(s->GetROIFromROIName(args_info.roiName_arg));
- filter.SetOutputImageFilename(args_info.output_arg);
- filter.Update();
- }
- else if (args_info.roi_given && args_info.roi_arg != -1) {
- filter.SetROI(s->GetROIFromROINumber(args_info.roi_arg));
- filter.SetOutputImageFilename(args_info.output_arg);
- filter.Update();
+ if (args_info.roiName_given || (args_info.roi_given && args_info.roi_arg != -1)) {
+ clitk::DicomRT_ROI::Pointer roi;
+ if (args_info.roiName_given) {
+ roi = s->GetROIFromROIName(args_info.roiName_arg);
+ }
+ else if (args_info.roi_given && args_info.roi_arg != -1) {
+ roi = s->GetROIFromROINumber(args_info.roi_arg);
+ }
+ if (roi) {
+ // New filter to convert to binary image
+ clitk::DicomRTStruct2ImageFilter filter;
+ filter.SetCropMaskEnabled(args_info.crop_flag);
+ filter.SetImageFilename(args_info.image_arg); // Used to get spacing + origin
+ if (args_info.vtk_flag) {
+ filter.SetWriteMesh(true);
+ }
+ filter.SetROI(roi);
+ filter.SetOutputImageFilename(outputFileName(roi, args_info));
+ filter.Update();
+ } else {
+ std::cerr<<"No ROI with this name/id"<<std::endl;
+ return EXIT_FAILURE;
+ }