Program: gdcm
Module: $RCSfile: test4DSplitter.cxx,v $
Language: C++
- Date: $Date: 2011/04/20 15:03:54 $
- Version: $Revision: 1.7 $
+ Date: $Date: 2011/09/20 16:09:05 $
+ Version: $Revision: 1.8 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
the same time.
*/
-
#include "gdcmFile.h"
#include "gdcmSerieHelper.h"
#include <vtkImageData.h>
// n directories
std::string strDirName("/home/jpr/Desktop/patient Andrei Dyn/dyn");
-
+//std::string strDirName("/home/jpr/Desktop/patient Andrei Dyn/dyn2"); // very small sample
// ----- Begin Processing -----
unsigned short int grSplit;
// ==> use SortOnUserFunction !
spl->setSortOnUserFunction(myCompareFunction0008_0032);
-
std::cout << "Everything set" << std::endl;
bool res=spl->Go();
output = spl->GetImageDataVector();
-
std::cout << "--------------------------------" << std::endl;
std::cout << "Vector size " << output->size() << std::endl;
std::cout << "--------------------------------" << std::endl;
//std::cout << "========================================" << std::endl;
//(*it)->PrintSelf(std::cout, vtkIndent(2));
}
- //delete spl;
+
+ delete spl;
+
+ // To please valgring
+ std::vector<vtkImageData*>::iterator it2;
+ for ( it2 = output->begin(); // for each vtkImageData*
+ it2 != output->end();
+ ++it2)
+ {
+ (*it2)->Delete(); // delete vtkImageData
+ }
+ delete output;
}
//grSort=0x0018;
//elSort=0x1060;
- // Aquisition Time : 0008|0032
-spl->setSplitOnTag(0x0008, 0x0032);
+ // Aquisition Time : 0008|0032
+ spl->setSplitOnTag(0x0008, 0x0032);
-spl->setSortOnPosition();
+ spl->setSortOnPosition();
std::cout << "Everything set" << std::endl;
bool res=spl->Go();
//(*it)->PrintSelf(std::cout, vtkIndent(2));
}
- // delete spl;
+ delete spl;
+
+ // To please valgring
+ std::vector<vtkImageData*>::iterator it2;
+ for ( it2 = output->begin(); // for each vtkImageData*
+ it2 != output->end();
+ ++it2)
+ {
+ (*it2)->Delete(); // delete vtkImageData
+ }
+ delete output;
}
// Pour un directory '4D'
Program: gdcm
Module: $RCSfile: vtkGdcm4DSplitter.cxx,v $
Language: C++
- Date: $Date: 2011/04/21 09:14:31 $
- Version: $Revision: 1.14 $
+ Date: $Date: 2011/09/20 16:09:05 $
+ Version: $Revision: 1.15 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
*/
vtkGdcm4DSplitter::~vtkGdcm4DSplitter()
{
- /// \TODO : delete everything that must be!
+ /// \TODO : delete everything that must be!
+
+ GDCM_NAME_SPACE::XCoherentFileSetmap::iterator it;
+ std::vector<GDCM_NAME_SPACE::File*>::iterator it2;
+
+ for ( it = xcm.begin(); // for each std::vector<gdcm::File*>
+ it != xcm.end();
+ ++it)
+ {
+ for ( it2 = (*it).second->begin(); // for each gdcm::File*
+ it2 != (*it).second->end();
+ ++it2)
+ {
+ (*it2)->Delete(); // delete gdcm::File
+ }
+ delete (*it).second; // delete the now empty std::vector<gdcm::File*>
+ }
+
+ // VectGdcmFileLists is a vector of pointers on elements of xcm : nothing to do!
+
}
// Locate Data to process
//SortOnTag=false;
SortOnFileName=false;
SortOnUserFunction=true;
- }
+ }
// void setSortConvertToFloat(bool conv)
// {
}
GDCM_NAME_SPACE::FileList *l;
-
+
GDCM_NAME_SPACE::SerieHelper *s;
s = GDCM_NAME_SPACE::SerieHelper::New();
-
+
//
// Load the gdcm::File* set, according to user's requierements
// ------------------------------------------------------------
xcm = s->SplitOnTagValueConvertToFloat(l, SplitGroup, SplitElem);
}
}
-
+
if (xcm.size() == 0)
{
if(verbose)
std::cout << xcm.size() << " XCoherent entries found" << std::endl;
}
-// put here, to avoid segfault when unaware user sets SplitOnly to true, and the asks for ImageDataVector
-ImageDataVector = new std::vector<vtkImageData*>;
+ // put here, to avoid segfault when unaware user sets SplitOnly to true, and the asks for ImageDataVector
+ ImageDataVector = new std::vector<vtkImageData*>;
-std::cout <<"SplitOnly " << SplitOnly << std::endl;
+ std::cout <<"SplitOnly " << SplitOnly << std::endl;
if(SplitOnly)
return true;
//
// ImageDataVector = new std::vector<vtkImageData*>;
/// \TODO move inside the loop, or be clever using vtk!
- // vtkGdcmReader *reader = vtkGdcmReader::New(); // move inside the loop, or be clever using vtk!
-
- // XCoherentFileSetmap map < critère de split, FileList (= std::vector de gdcm::File*) >
+ vtkGdcmReader *reader = vtkGdcmReader::New(); // move inside the loop, or be clever using vtk!
+
+ // XCoherentFileSetmap map < critère de split, FileList (= std::vector de gdcm::File*) >
for (GDCM_NAME_SPACE::XCoherentFileSetmap::iterator i = xcm.begin();
- i != xcm.end();
- ++i)
+ i != xcm.end();
+ ++i)
{
- vtkGdcmReader *reader = vtkGdcmReader::New(); /// \TODO FIXME : unable to delete!
+ //vtkGdcmReader *reader = vtkGdcmReader::New(); /// \TODO FIXME : unable to delete!
reader->SetFlipY(FlipY);
// better user SetFileLowerLeft()
//std::cout << std::endl;
}
- //reader->Delete(); // \TODO : fix
+ reader->Delete(); // \TODO : fix
s->Delete();
// f->Delete();
delete l;
GDCM_NAME_SPACE::DirList dirlist(DirName, Recursive); // NO recursive exploration
fileNames = dirlist.GetFilenames(); // all the file names
}
-
+
else if (TypeDir == 2) // a std::vector of directory names was set as input
{
int nbDir = VectDirName.size();
++it)
{
int maxSize = 0x7fff; // load Elements of any length
+ /// \TODO ? gdcm::File are never free'd
f = GDCM_NAME_SPACE::File::New();
f->SetMaxSizeLoadEntry(maxSize);
f->SetFileName( *it );
//to right, "y" is posterior to anterior, and "z" is foot to head (RAH).
//iop is calculated based on the file file
- float cosines[6];
+ float cosines[6];
double normal[3];
double ipp[3];
double dist;
double min = 0, max = 0;
- bool first = true;
+ bool first = true;
//double ZSpacing; // useless here! // JPR
bool DirectOrder = true; // remove it!
Program: gdcm
Module: $RCSfile: vtkGdcmReader.h,v $
Language: C++
- Date: $Date: 2011/03/31 12:37:54 $
- Version: $Revision: 1.40 $
+ Date: $Date: 2011/09/20 16:09:05 $
+ Version: $Revision: 1.41 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
vtkGetMacro(KeepOverlays, bool);
vtkBooleanMacro(KeepOverlays, bool);
-// Implementation note: when FileLowerLeft (gdcm2) is set to on the image is not flipped
+// Implementation note: when FileLowerLeft (gdcm2) is set to on, the image is not flipped
// upside down as VTK would expect, use this option only if you know what you are doing.
// vtkSetMacro(FileLowerLeft, bool);
// vtkGetMacro(FileLowerLeft, bool);
projects / gdcm.git / commitdiff