3 ## Command line arguments
4 if [ "$#" -lt 5 ]; then
5 echo "Usage: $0 input_image [index/point] seed_x seed_y seed_z"
10 mori_seg=`dirname $0`/fpa_CTBronchi_MoriSegmentation
11 mori_lab=`dirname $0`/fpa_CTBronchi_MoriLabelling
12 random_walker=`dirname $0`/fpa_CTBronchi_RandomWalker
19 base_name=`dirname $input_image`/`basename $input_image .mhd`
21 mori_output_image="$base_name"_mori.mhd
22 mori_output_signal="$base_name"_mori_signal.txt
23 mori_init_threshold=-1024
26 mori_minimum_threshold=-850
29 mori_signal_kernel_size=20
30 mori_signal_threshold=500
31 mori_signal_influence=500
33 labels_output_image="$base_name"_labels.mhd
34 label_upper_threshold=-600
38 random_walker_output_image="$base_name"_rw.mhd
42 $input_image $mori_output_image $mori_output_signal \
43 $mori_init_threshold \
46 $mori_minimum_threshold \
49 $mori_signal_kernel_size \
50 $mori_signal_threshold \
51 $mori_signal_influence \
53 $seed_x $seed_y $seed_z
56 $input_image $mori_output_image $labels_output_image \
57 $label_upper_threshold \
63 $input_image $labels_output_image $random_walker_output_image \